[Psidev-pi-dev] New version 4.1.26 of psi-ms.obo

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Dear proteomics/metabolomics community,

following are the new/changed terms for the version 4.1.26 of the
psi-ms.obo file. It can be downloaded from
https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo

New CV terms in version 4.1.26 of psi-ms.obo:
=============================================
[Term]
id: MS:1003019
name: pressure chromatogram
def: "Representation of chromatographic pressure versus time." [PSI:MS]
is_a: MS:1000626 ! chromatogram type

[Term]
id: MS:1003020
name: flow rate chromatogram
def: "Representation of the chromatographic flow rate versus time." [PSI:MS]
is_a: MS:1000626 ! chromatogram type

Changed CV terms in version 4.1.26 of psi-ms.obo:
=================================================
************ Changed definition from
************ 'The representation of detector response versus time.' to
************ 'Representation of a chromatographic separation attribute 
measurement versus time.'
[Term]
id: MS:1000625
name: chromatogram
def: "Representation of a chromatographic separation attribute 
measurement versus time." [PSI:MS]
relationship: part_of MS:1001458 ! spectrum generation information

************ Changed definition from
************ 'Broad category or type of a chromatogram.' to
************ 'Type of chromatogram measurement being represented.'
[Term]
id: MS:1000626
name: chromatogram type
def: "Type of chromatogram measurement being represented." [PSI:MS]
relationship: part_of MS:1000625 ! chromatogram

************ Changed name from
************ 'mass chromatogram' to
************ 'ion current chromatogram'
************ and definition from
************ 'A plot of the relative abundance of a beam or other 
collection of ions as a function of the retention time.' to
************ 'Representation of the current of ions versus time.'
[Term]
id: MS:1000810
name: ion current chromatogram
def: "Representation of the current of ions versus time." [PSI:MS]
is_a: MS:1000524 ! data file content
is_a: MS:1000626 ! chromatogram type

************ Changed definition from
************ 'The measurement of electromagnetic properties as a 
function of the retention time.' to
************ 'Representation of electromagnetic properties versus time.'
[Term]
id: MS:1000811
name: electromagnetic radiation chromatogram
def: "Representation of electromagnetic properties versus time." [PSI:MS]
synonym: "EMR radiation chromatogram" EXACT []
is_a: MS:1000524 ! data file content
is_a: MS:1000626 ! chromatogram type

************ Changed definition from
************ 'The measurement of light absorbed by the sample as a 
function of the retention time.' to
************ 'Representation of light absorbed by the sample versus time.'
[Term]
id: MS:1000812
name: absorption chromatogram
def: "Representation of light absorbed by the sample versus time." [PSI:MS]
is_a: MS:1000811 ! electromagnetic radiation chromatogram

************ Changed definition from
************ 'The measurement of light emitted by the sample as a 
function of the retention time.' to
************ 'Representation of light emitted by the sample versus time.'
[Term]
id: MS:1000813
name: emission chromatogram
def: "Representation of light emitted by the sample versus time." [PSI:MS]
is_a: MS:1000811 ! electromagnetic radiation chromatogram

************ Changed definition from
************ 'Chromatogram obtained by plotting the total ion current 
detected in each of a series of mass spectra recorded as a function of 
retention time.' to
************ 'Representation of the total ion current detected in each 
of a series of mass spectra versus time.'
************ and is_a relationship from
************ 'is_a: MS:1000810 ! mass chromatogram' to
************ 'is_a: MS:1000810 ! ion current chromatogram'
[Term]
id: MS:1000235
name: total ion current chromatogram
def: "Representation of the total ion current detected in each of a 
series of mass spectra versus time." [PSI:MS]
synonym: "TIC chromatogram" EXACT []
is_a: MS:1000810 ! ion current chromatogram

************ Changed definition from
************ 'Chromatogram created by creating an array of the 
measurements of a specific single ion current at each time point.' to
************ 'Representation of an array of the measurements of a 
specific single ion current versus time.'
************ and is_a relationship from
************ 'is_a: MS:1000810 ! mass chromatogram' to
************ 'is_a: MS:1000810 ! ion current chromatogram'
[Term]
id: MS:1000627
name: selected ion current chromatogram
def: "Representation of an array of the measurements of a specific 
single ion current versus time." [PSI:MS]
synonym: "SIC chromatogram" EXACT []
is_a: MS:1000810 ! ion current chromatogram

************ Changed definition from
************ 'Chromatogram created by creating an array of the most 
intense peaks at each time point.' to
************ 'Representation of an array of the most intense peaks 
versus time.'
************ and is_a relationship from
************ 'is_a: MS:1000810 ! mass chromatogram' to
************ 'is_a: MS:1000810 ! ion current chromatogram'
[Term]
id: MS:1000628
name: basepeak chromatogram
def: "Representation of an array of the most intense peaks versus time." 
[PSI:MS]
is_a: MS:1000810 ! ion current chromatogram

************ Changed definition from
************ 'Chromatogram created by creating an array of the 
measurements of a selectively monitored ion at each time point.' to
************ 'Representation of an array of the measurements of a 
selectively monitored ion versus time.'
************ and is_a relationship from
************ 'is_a: MS:1000810 ! mass chromatogram' to
************ 'is_a: MS:1000810 ! ion current chromatogram'
[Term]
id: MS:1001472
name: selected ion monitoring chromatogram
def: "Representation of an array of the measurements of a selectively 
monitored ion versus time." [PSI:MS]
synonym: "SIM chromatogram" EXACT []
is_a: MS:1000810 ! ion current chromatogram

************ Changed definition from
************ 'Chromatogram created by creating an array of the 
measurements of a selectively monitored reaction at each time point.' to
************ 'Representation of an array of the measurements of a 
selectively monitored reaction versus time.'
************ and is_a relationship from
************ 'is_a: MS:1000810 ! mass chromatogram' to
************ 'is_a: MS:1000810 ! ion current chromatogram'
[Term]
id: MS:1001473
name: selected reaction monitoring chromatogram
def: "Representation of an array of the measurements of a selectively 
monitored reaction versus time." [PSI:MS]
synonym: "SRM chromatogram" EXACT []
is_a: MS:1000810 ! ion current chromatogram

************ Changed definition from
************ 'OBSOLETE Chromatogram created by creating an array of the 
measurements of a series of monitored reactions at each time point.' to
************ 'OBSOLETE Representation of an array of the measurements of 
a series of monitored reactions versus time.'
************ and is_a relationship from
************ 'is_a: MS:1000810 ! mass chromatogram' to
************ 'is_a: MS:1000810 ! ion current chromatogram'
[Term]
id: MS:1001474
name: consecutive reaction monitoring chromatogram
def: "OBSOLETE Representation of an array of the measurements of a 
series of monitored reactions versus time." [PSI:MS]
comment: This term was made obsolete because, by design, it can't be 
properly represented in mzML 1.1. CRM experiments must be represented in 
a spectrum-centric way.
synonym: "CRM chromatogram" EXACT []
is_a: MS:1000810 ! ion current chromatogram
is_obsolete: true

Best Regards,
Gerhard

-- 

*----------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*Scientific assistant*

*Ruhr-Universität Bochum, Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

*Building ProDi E2.234 | Gesundheitscampus 4 | D-44801 Bochum*

*Fon: *+49 (0)234 32-29272 | *Fax: *+49 (0)234 32-14554

*E-Mail: *ger...@ru... <mailto:ger...@ru...>

*Web: *www.ruhr-uni-bochum.de/mpc <http://www.ruhr-uni-bochum.de/mpc>