[Psidev-pi-dev] Release candidate 4.1.6_rc1 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics/metabolomics community,


following are the new terms from the release candidate 4.1.6_rc1 of the 
psi-ms.obo file.
It contains new and modified CV terms for ion mobility.


New CV terms in version 4.1.6_rc1 of psi-ms.obo:
================================================
[Term]
id: MS:1002892
name: ion mobility attribute
def: "An attribute describing ion mobility searches." [PSI:PI]
is_a: MS:1000503 ! scan attribute
is_a: MS:1002345 ! PSM-level attribute

[Term]
id: MS:1002893
name: ion mobility array
def: "An array of ion mobility data." [PSI:PI]
is_a: MS:1000513 ! binary data array


Changed CV terms in version 4.1.6_rc1 of psi-ms.obo:
====================================================
************ New parent term (ion mobility attribute)
[Term]
id: MS:1001581
name: FAIMS compensation voltage
def: "The DC potential applied to the asymmetric waveform in FAIMS that 
compensates for the difference between high and low field mobility of an 
ion." [PSI:MS]
synonym: "FAIMS CV" EXACT []
is_a: MS:1002892 ! ion mobility attribute

************ New parent term (ion mobility attribute)
[Term]
id: MS:1002476
name: ion mobility drift time
def: "Drift time of an ion or spectrum of ions as measured in an ion 
mobility mass spectrometer. This time might refer to the central value 
of a bin into which all ions within a narrow range of drift time have 
been aggregated." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1000455 ! ion selection attribute
is_a: MS:1002892 ! ion mobility attribute
relationship: has_units UO:0000028 ! millisecond

************ New parent term (ion mobility attribute)
[Term]
id: MS:1002815
name: inverse reduced ion mobility
def: "Ion mobility measurement for an ion or spectrum of ions as 
measured in an ion mobility mass spectrometer. This might refer to the 
central value of a bin into which all ions within a narrow range of 
mobilities have been aggregated." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1000455 ! ion selection attribute
is_a: MS:1002892 ! ion mobility attribute
relationship: has_units MS:1002814 ! "volt-second per square centimeter"

************ New parent term (ion mobility array)
[Term]
id: MS:1002477
name: mean drift time array
def: "Array of drift times, averaged from a matrix of binned m/z and 
drift time values, corresponding to spectrum of individual peaks encoded 
with an m/z array." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1002893 ! ion mobility array
relationship: has_units UO:0000028 ! millisecond
relationship: has_units UO:0000010 ! second

************ Renamed 'mean ion mobility array'
************     --> 'mean inverse reduced ion mobility array'
************ and new parent term (ion mobility array)
[Term]
id: MS:1002816
name: mean inverse reduced ion mobility array
def: "Array of drift times or inverse reduced ion mobilities, averaged 
from a matrix of binned m/z and ion mobility values, corresponding to a 
spectrum of individual peaks encoded with an m/z array." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1002893 ! ion mobility array
relationship: has_units UO:0000028 ! millisecond
relationship: has_units UO:0000010 ! second
relationship: has_units MS:1002814 ! "volt-second per square centimeter"

************ Added a value to the following 3 CV-terms
[Term]
id: MS:1002889
name: Progenesis MetaScope score
def: "The confidence score produced by Progenesis QI." [PSI:PI]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1002888 ! small molecule confidence measure

[Term]
id: MS:1002890
name: fragmentation score
def: "The fragmentation confidence score." [PSI:PI]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1002888 ! small molecule confidence measure

[Term]
id: MS:1002891
name: isotopic fit score
def: "The isotopic fit confidence score." [PSI:PI]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1002888 ! small molecule confidence measure


Best Regards,
Gerhard

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

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*Medizinisches Proteom-Center*

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