[Psidev-ms-dev] New version 4.1.5 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics/metabolomics community,

the new version 4.1.5 of the psi-ms.obo file can be downloaded from
https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo

It contains new CV terms for usage in mzTab-M files.

New CV terms in version 4.1.5 of psi-ms.obo:
============================================
[Term]
id: MS:1002878
name: small molecule analysis software
def: "Software for the analysis of small molecules." [PSI:PI]
is_a: MS:1001456 ! analysis software

[Term]
id: MS:1002879
name: Progenesis QI
def: "Metabolomics analysis software for LC-MS data from Nonlinear 
Dynamics." [PSI:PI]
is_a: MS:1002878 ! small molecule analysis software

[Term]
id: MS:1002880
name: Compound Discoverer
def: "Metabolomics analysis software from Thermo Fisher Scientific." 
[PSI:PI]
is_a: MS:1002878 ! small molecule analysis software

[Term]
id: MS:1002881
name: MyCompoundID
def: "Metabolite identification tool MyCompoundID." [PSI:PI, PMID:23373753]
is_a: MS:1002878 ! small molecule analysis software

[Term]
id: MS:1002882
name: study variable average function
def: "Function used to calculate the study variable quantification 
value." [PSI:PI]
is_a: MS:1001184 ! search statistics

[Term]
id: MS:1002883
name: median
def: "Median function." [PSI:PI]
is_a: MS:1002882 ! study variable average function

[Term]
id: MS:1002884
name: study variable variation function
def: "Function used to calculate the study variable quantification 
variation value." [PSI:PI]
is_a: MS:1001184 ! search statistics

[Term]
id: MS:1002885
name: standard error
def: "Standard error function." [PSI:PI]
is_a: MS:1002884 ! study variable variation function

[Term]
id: MS:1002886
name: small molecule quantification datatype
def: "The value reported in a small molecule quantification." [PSI:PI]
is_a: MS:1001805 ! quantification datatype

[Term]
id: MS:1002887
name: Progenesis QI normalised abundance
def: "The normalised abundance produced by Progenesis QI LC-MS." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002886 ! small molecule quantification datatype

[Term]
id: MS:1002888
name: small molecule confidence measure
def: "The confidence score produced by a small molecule analysis 
software." [PSI:PI]
is_a: MS:1002694 ! single identification result attribute

[Term]
id: MS:1002889
name: Progenesis MetaScope score
def: "The confidence score produced by Progenesis QI." [PSI:PI]
is_a: MS:1002888 ! small molecule confidence measure

[Term]
id: MS:1002890
name: fragmentation score
def: "The fragmentation confidence score." [PSI:PI]
is_a: MS:1002888 ! small molecule confidence measure

[Term]
id: MS:1002891
name: isotopic fit score
def: "The isotopic fit confidence score." [PSI:PI]
is_a: MS:1002888 ! small molecule confidence measure


Best Regards,
Gerhard

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

*Building *ZKF E.055 | Universitätsstraße 150 | D-44801 Bochum

*Fon *+49 (0)234 32-29272 | *Fax *+49 (0)234 32-14554

*E-mail***ger...@ru... <mailto:ger...@ru...>

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