Re: [Psidev-ms-dev] New version 4.1.5 of psi-ms.obo

[mayerg97 <ger...@ru...>]

> Dear proteomics/metabolomics community,
>
> the new version 4.1.5 of the psi-ms.obo file can be downloaded from
> https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo
>
> It contains new CV terms for usage in mzTab-M files.
>
> New CV terms in version 4.1.5 of psi-ms.obo:
> ============================================
> [Term]
> id: MS:1002878
> name: small molecule analysis software
> def: "Software for the analysis of small molecules." [PSI:PI]
> is_a: MS:1001456 ! analysis software
>
> [Term]
> id: MS:1002879
> name: Progenesis QI
> def: "Metabolomics analysis software for LC-MS data from Nonlinear 
> Dynamics." [PSI:PI]
> is_a: MS:1002878 ! small molecule analysis software
>
> [Term]
> id: MS:1002880
> name: Compound Discoverer
> def: "Metabolomics analysis software from Thermo Fisher Scientific." 
> [PSI:PI]
> is_a: MS:1002878 ! small molecule analysis software
>
> [Term]
> id: MS:1002881
> name: MyCompoundID
> def: "Metabolite identification tool MyCompoundID." [PSI:PI, 
> PMID:23373753]
> is_a: MS:1002878 ! small molecule analysis software
>
> [Term]
> id: MS:1002882
> name: study variable average function
> def: "Function used to calculate the study variable quantification 
> value." [PSI:PI]
> is_a: MS:1001184 ! search statistics
>
> [Term]
> id: MS:1002883
> name: median
> def: "Median function." [PSI:PI]
> is_a: MS:1002882 ! study variable average function
>
> [Term]
> id: MS:1002884
> name: study variable variation function
> def: "Function used to calculate the study variable quantification 
> variation value." [PSI:PI]
> is_a: MS:1001184 ! search statistics
>
> [Term]
> id: MS:1002885
> name: standard error
> def: "Standard error function." [PSI:PI]
> is_a: MS:1002884 ! study variable variation function
>
> [Term]
> id: MS:1002886
> name: small molecule quantification datatype
> def: "The value reported in a small molecule quantification." [PSI:PI]
> is_a: MS:1001805 ! quantification datatype
>
> [Term]
> id: MS:1002887
> name: Progenesis QI normalised abundance
> def: "The normalised abundance produced by Progenesis QI LC-MS." [PSI:PI]
> xref: value-type:xsd\:double "The allowed value-type for this CV term."
> is_a: MS:1002886 ! small molecule quantification datatype
>
> [Term]
> id: MS:1002888
> name: small molecule confidence measure
> def: "The confidence score produced by a small molecule analysis 
> software." [PSI:PI]
> is_a: MS:1002694 ! single identification result attribute
>
> [Term]
> id: MS:1002889
> name: Progenesis MetaScope score
> def: "The confidence score produced by Progenesis QI." [PSI:PI]
> is_a: MS:1002888 ! small molecule confidence measure
>
> [Term]
> id: MS:1002890
> name: fragmentation score
> def: "The fragmentation confidence score." [PSI:PI]
> is_a: MS:1002888 ! small molecule confidence measure
>
> [Term]
> id: MS:1002891
> name: isotopic fit score
> def: "The isotopic fit confidence score." [PSI:PI]
> is_a: MS:1002888 ! small molecule confidence measure
>
>
> Best Regards,
> Gerhard
>
> -- 
>
> *--------------------------------------------------------------------*
>
> *Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*
>
> *PhD student*
>
> *Medizinisches Proteom-Center*
>
> *DEPARTMENT Medical Bioinformatics*
>
> *Building *ZKF E.055 | Universitätsstraße 150 | D-44801 Bochum
>
> *Fon *+49 (0)234 32-29272 | *Fax *+49 (0)234 32-14554
>
> *E-mail***ger...@ru... <mailto:ger...@ru...>
>
> www.medizinisches-proteom-center.de 
> <http://www.medizinisches-proteom-center.de/>
>

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

*Building *ZKF E.055 | Universitätsstraße 150 | D-44801 Bochum

*Fon *+49 (0)234 32-29272 | *Fax *+49 (0)234 32-14554

*E-mail***ger...@ru... <mailto:ger...@ru...>

www.medizinisches-proteom-center.de 
<http://www.medizinisches-proteom-center.de/>