Re: [Psidev-qc-dev] Doing my homework for qcML

[Jinmeng J. <jia...@16...>]

Hi, David and all.


Sure. I have shared the MIAPE QC paragraph to Weimin and we have arranged a short meeting in Shanghai before he go to Heidelberg to make sure everything is prepared. 
I am sorry for not being able to attend the spring meeting. 


Best,
Jinmeng







At 2018-04-05 15:47:24, "David Tabb" <dt...@su...> wrote:
>Hi, all.
>
>In creating my hand-crafted example of qcML from QuaMeter IDFree, I've
>installed Protege, an ontology viewer.  It's useful for perusing the
>HUPO-PSI MS ontology (http://purl.obolibrary.org/obo/ms/4.1.2/ms.owl).
>
>I'm a bit confused, though, in how to review the qcML ontology. At
>present, I can find an OBO to download
>(https://github.com/HUPO-PSI/qcML-development/raw/master/cv/v0_0_10/qc-cv.obo),
>but I do not see an OWL equivalent.  Helpfully, I can simply review the
>OBO in a text editor.
>
>In particular, I am trying to determine which QC accessions each of my
>IDFree metrics will represent.  Does each metric generator get a
>particular series of numbers that relate to that software's outputs?
>Can I reuse a metric accession from other software if my tool generates
>the same values (such as the number of MS/MS scans)?
>
>Jinmeng Jia, will you be able to share your paragraph that meets the
>draft MIAPE QC standard with Weimin Zhu for him to present at
>Heidelberg?  I was sorry to hear you won't be able to attend yourself.
>
>Thanks,
>Dave
>
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--

Jinmeng, Jia
Ph.D. candidate,Tieliu Shi's Lab
Center for Bioinformatics and Computational Biology
Shanghai Key Laboratory of Regulatory Biology
Institute of Biomedical Sciences and School of Life Sciences
East China Normal University
Minhang Campus: 500 Dongchuan RD., Shanghai 200241