[Psidev-pi-dev] New version 4.1.1 of psi-ms.obo

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Dear proteomics community,

the new version 4.1.1 of the psi-ms.obo file can be downloaded from
https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo

It adds some new terms from PRIDE CV.

New CV terms in version 4.1.1 of psi-ms.obo:
============================================
[Term]
id: MS:1002844
name: Experiment additional parameter
def: "Root node for terms relating to the description of an Experiment 
in relation to the PRIDE-XML element 
ExperimentCollection/Experiment/additional/cvParam." [PSI:PI]
is_a: MS:1001458 ! spectrum generation information

[Term]
id: MS:1002845
name: Associated file URI
def: "URI of one external file associated to the PRIDE experiment (maybe 
through a PX submission)." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002846
name: Associated raw file URI
def: "URI of one raw data file associated to the PRIDE experiment (maybe 
through a PX submission)." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002847
name: ProteomeCentral dataset URI
def: "URI associated to one PX submission in ProteomeCentral." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002848
name: Result file URI
def: "URI of one file labeled as 'Result', associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002849
name: Search engine output file URI
def: "URI of one search engine output file associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002850
name: Peak list file URI
def: "URI of one of one search engine output file associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002851
name: Other type file URI
def: "URI of one file labeled as 'Other', associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002852
name: Dataset FTP location
def: "FTP location of one entire PX data set." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002853
name: Dataset with no associated published manuscript
def: "A dataset which does not have an associated published manuscript." 
[PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002854
name: Peer-reviewed dataset
def: "Dataset has been peer-reviewed somehow." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002855
name: Non peer-reviewed dataset
def: "Dataset that has not been peer-reviewed by any means." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002856
name: Supported dataset by repository
def: "The PX dataset is supported by and is available through the 
submission repository." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002857
name: Unsupported dataset by repository
def: "The PX dataset is not fully supported by the submission 
repository." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002858
name: Dataset with its publication pending
def: "A dataset which has an associated manuscript pending for 
publication." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002859
name: Additional associated raw file URI
def: "Additional URI of one raw data file associated to the PRIDE 
experiment (maybe through a PX submission). The URI is provided via an 
additional resource to PRIDE." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002860
name: Gel image file URI
def: "URI of one gel image file associated to one PX submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002861
name: Reprocessed complete dataset
def: "All the raw files included in the original dataset (or group of 
original datasets) have been reanalysed." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002862
name: Reprocessed subset dataset
def: "A subset of the raw files included in the original dataset (or 
group of original datasets) has been reanalysed." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002863
name: Data derived from previous dataset
def: "One dataset is a reanalysis of previously published data." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002864
name: No PTMs are included in the dataset
def: "No post-translational-modifications are been included in the 
identified peptides of one dataset." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002865
name: Accepted manuscript
def: "A dataset has one associated manuscript, which has been accepted 
but no PubMedID is available yet." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002866
name: Reference
def: "Literature reference associated with one dataset (including the 
authors, title, year and journal details). The value field can be used 
for the PubMedID, or to specify if one manuscript is just submitted or 
accepted, but it does not have a PubMedID yet." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002867
name: Experimental information has been refined since this experiment 
was originally made publicly available
def: "This means that the experimental information available has been 
improved, for instance precursor charges were added." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002868
name: Original data
def: "One dataset is not a reanalysis of previously published data." 
[PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

Changed CV terms in version 4.1.1 of psi-ms.obo:
================================================
************ No changed terms

Best Regards,
Gerhard