[Psidev-pi-dev] Release candidate 4.1.1_rc1 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

following are the changes for the release candidate 4.1.1_rc1 of the 
psi-ms.obo file.
It integrates some terms from the PRIDE-CV.


New CV terms in version 4.1.1_rc1 of psi-ms.obo:
================================================
[Term]
id: MS:1002844
name: Experiment additional parameter
def: "Root node for terms relating to the description of an Experiment 
in relation to the PRIDE-XML element 
ExperimentCollection/Experiment/additional/cvParam." [PSI:PI]
is_a: MS:1001458 ! spectrum generation information

[Term]
id: MS:1002845
name: Associated file URI
def: "URI of one external file associated to the PRIDE experiment (maybe 
through a PX submission)." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002846
name: Associated raw file URI
def: "URI of one raw data file associated to the PRIDE experiment (maybe 
through a PX submission)." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002847
name: ProteomeCentral dataset URI
def: "URI associated to one PX submission in ProteomeCentral." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002848
name: Result file URI
def: "URI of one file labeled as 'Result', associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002849
name: Search engine output file URI
def: "URI of one search engine output file associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002850
name: Peak list file URI
def: "URI of one of one search engine output file associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002851
name: Other type file URI
def: "URI of one file labeled as 'Other', associated to one PX 
submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002852
name: Dataset FTP location
def: "FTP location of one entire PX data set." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002853
name: Dataset with no associated published manuscript
def: "A dataset which does not have an associated published manuscript." 
[PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002854
name: Peer-reviewed dataset
def: "Dataset has been peer-reviewed somehow." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002855
name: Non peer-reviewed dataset
def: "Dataset that has not been peer-reviewed by any means." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002856
name: Supported dataset by repository
def: "The PX dataset is supported by and is available through the 
submission repository." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002857
name: Unsupported dataset by repository
def: "The PX dataset is not fully supported by the submission 
repository." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002858
name: Dataset with its publication pending
def: "A dataset which has an associated manuscript pending for 
publication." [PSI:PI]
is_a: MS:1002844 ! Experiment additional parameter

[Term]
id: MS:1002859
name: Additional associated raw file URI
def: "Additional URI of one raw data file associated to the PRIDE 
experiment (maybe through a PX submission). The URI is provided via an 
additional resource to PRIDE." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI

[Term]
id: MS:1002860
name: Gel image file URI
def: "URI of one gel image file associated to one PX submission." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002845 ! Associated file URI



Changed CV terms in version 4.1.1_rc1 of psi-ms.obo:
====================================================
************ No changed terms


Best Regards,
Gerhard

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

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