[Psidev-pi-dev] Release candidate 4.0.18_rc1 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

following are the changes for the release candidate 4.0.18_rc1 of the 
psi-ms.obo file.
It contains terms for the binary mzMLb format and for describing 
external references.


New CV terms in version 4.0.18_rc1 of psi-ms.obo:
=================================================
************ New terms for the binary mzMLb format
[Term]
id: MS:1002838
name: mzMLb format
def: "mzMLb file format, mzML encapsulated within HDF5." [PSI:PI, 
https://github.com/biospi/mzmlb]
is_a: MS:1000560 ! mass spectrometer file format

[Term]
id: MS:1002839
name: Conversion to mzMLb
def: "Conversion of a file format to Proteomics Standards Initiative 
mzMLb file format." [PSI:PI]
is_a: MS:1000530 ! file format conversion

************ New terms for data characterizing extrenal references
[Term]
id: MS:1002840
name: external reference data
def: "Data belonging to an external reference." [PSI:MS]
relationship: part_of MS:0000000 ! Proteomics Standards Initiative Mass 
Spectrometry Vocabularies

[Term]
id: MS:1002841
name: external HDF5 dataset
def: "The HDF5 dataset location containing the binary data, relative to 
the dataset containing the mzML. Also indicates that there is no data in 
the <binary> section of the BinaryDataArray." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002840 ! external reference data

[Term]
id: MS:1002842
name: external offset
def: "The position in the external data where the array begins." [PSI:PI]
xref: value-type:xsd\:nonNegativeInteger "The allowed value-type for 
this CV term."
relationship: has_units UO:0000189 ! Count
is_a: MS:1002840 ! external reference data

[Term]
id: MS:1002843
name: external array length
def: "Describes how many fields an array contains." [PSI:PI]
xref: value-type:xsd\:nonNegativeInteger "The allowed value-type for 
this CV term."
relationship: has_units UO:0000189 ! Count
is_a: MS:1002840 ! external reference data


Changed CV terms in version 4.0.18_rc1 of psi-ms.obo:
=====================================================
************ Is now a child of MS:1002840 ! external reference data
[Term]
id: MS:1000878
name: external reference identifier
def: "An identifier/accession number to an external reference database." 
[PSI:MS]
is_a: MS:1002840 ! external reference data

************ Changed is_a: MS:1000878 ! external reference identifier
************ -->       is_a: MS:1002840 ! external reference data
[Term]
id: MS:1001923
name: external reference keyword
def: "Free text attribute that can enrich the information about an 
entity." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002840 ! external reference data

Best Regards,
Gerhard

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

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