Re: [Psidev-ms-dev] Release candidate 4.0.14_rc1 of psi-ms.obo

[Walzer <wa...@eb...>]

Hi,

I agree with Steffen that mitigating the restriction to something more 
open (like a originating description) is a good idea.

best,

On 04/08/17 08:27, Neumann, Steffen wrote:
> Hi,
>
> I am a bit unsure about this description as OpenMS *specific* formats,
> what if xcms would read/write that one day ?
>
> While we have prior examples (MGF ...) a slight modification
> could be "File format developed by the OpenMS team."
>
> I know that this is nitpicking, just wanted to share my 2c,
> and it's the OpenMS team and/or Gerd to decide.
>
> Yours,
> Steffen
>
>
> On Fri, 2017-07-21 at 09:32 +0200, mayerg97 via Psidev-ms-dev wrote:
>> Dear proteomics community,
>>
>> attached there's the release candidate 4.0.14_rc1 of the psi-ms.obo
>> file.
>> It contains new terms for OpenMS file formats.
>>
>>
>> New CV terms in version 4.0.14_rc1 of psi-ms.obo:
>> =================================================
>> ************ new terms for OpenMS file formats
>> [Term]
>> id: MS:1002822
>> name: OpenMS file format
>> def: "A file format specific for the OpenMS software." [PMID:
>> 27575624]
>> is_a: MS:1001459 ! file format
>>
>> [Term]
>> id: MS:1002823
>> name: idXML
>> def: "OpenMS intermediate identification format." [PSI:PI]
>> is_a: MS:1002822 ! OpenMS file format
>>
>> [Term]
>> id: MS:1002824
>> name: featureXML
>> def: "OpenMS feature file format." [PSI:PI]
>> is_a: MS:1002822 ! OpenMS file format
>>
>> [Term]
>> id: MS:1002825
>> name: consensusXML
>> def: "OpenMS consensus map format." [PSI:PI]
>> is_a: MS:1002822 ! OpenMS file format
>>
>>
>> Best Regards,
>> Gerhard
>> -- 
>> --------------------------------------------------------------------
>> Dipl. Inform. med., Dipl. Wirtsch. Inf. GERHARD MAYER
>> PhD student
>> Medizinisches Proteom-Center
>> DEPARTMENT Medical Bioinformatics
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-- 
Mathias Walzer
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
Office: +44 (0)1223 494 2610
E-mail: wa...@eb...