Re: [Psidev-qc-dev] Upcoming teleconference Friday 21/06

[Wout B. <wou...@ua...>]

Hi Reza,

I haven't heard anything from him anymore after the original Twitter conversation. I'll try to quickly contact him to see whether he has recovered from his travels.

Best,
Wout

> On 21 Jul 2017, at 10:05, Reza Salek <re...@eb...> wrote:
> 
> Dear all,
> 
> I will join a bit late today, Wout do you know if Jan is joining as well?
> 
> Best Wishes,
> Reza
> 
>> On 21 Jul 2017, at 08:55, Wout Bittremieux <wou...@ua...> wrote:
>> 
>> Dear colleagues,
>> 
>> Please find attached a (very limited) example qcML file for the iMonDB. There is still a lot of important information missing, but the most important discussion point is how to represent these instrument parameters and statistical summary values.
>> 
>> According to last month's discussion I've represented the summary statistics as a single quality parameter containing multiple values.
>> 
>> Currently there are no CV terms yet to represent instrument parameters. As there are 100s of different instrument parameters for each different instrument model I typically don't try to interpret these metrics. Therefore I think a general CV term denoting an "instrument parameter" could suffice in this case. And I've specified which parameter we're dealing with as the value of the XML element.
>> I'm not sure whether or not this would be the best strategy, so this is open for consideration.
>> 
>> I have also some remarks and uncertainties related to Mathias' example file (available on GitHub) to be discussed.
>> 
>> Thanks,
>> Wout
>> <imondb.qcml>
>> 
>> 
>>> On 21 Jul 2017, at 09:36, Martin Eisenacher via Psidev-qc-dev <psi...@li...> wrote:
>>> 
>>> Dear all,
>>> 
>>> as discussed, I changed the ‚quartile‘ and ‚percentile’ CV terms to general ‘n-tuple’ terms,
>>> for the attached obo file there is also a pull request in the github.
>>> 
>>> Best regards
>>>    Martin
>>> 
>>> Von: Jinmeng Jia [mailto:jia...@16...]
>>> Gesendet: Freitag, 21. Juli 2017 06:29
>>> An: psi...@li...
>>> Betreff: Re: [Psidev-qc-dev] Upcoming teleconference Friday 21/06
>>> 
>>> 
>>> Hi everyone,
>>> 
>>> Unfortunately I will not be able to attend today's TC. I have just been informed that I have to attend an award ceremony this afternoon, as I need to receive the award in person. My apologies!
>>> 
>>> Best,
>>> 
>>> Jinmeng
>>> 
>>> 
>>> 
>>> 
>>> At 2017-07-17 23:30:19, "Wout Bittremieux" <wou...@ua...> wrote:
>>> 
>>>> Dear colleagues,
>>>> 
>>>> This is a reminder that our next teleconference is scheduled for Friday, July 21st, at 9:00 GMT (10:00 British Summer Time, 11:00 Western Europe & South Africa, 17:00 China).
>>>> 
>>>> You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2
>>>> 
>>>> Provisional agenda items are:
>>>> - continued coordination between the CV and MIAPE-QC
>>>> - evaluate the CV in terms of OpenMS & iMonDB examples by Mathias & Wout
>>>> - report on new developments at Metabolomics Brisbane
>>>> - any additional items that need to be discussed...
>>>> 
>>>> I hope to talk to all of you on Friday.
>>>> 
>>>> Best,
>>>> Wout
>>> 
>>> 
>>> 
>>> 
>>> 
>>> --
>>> Jinmeng, Jia
>>> Ph.D. candidate,Tieliu Shi's Lab
>>> Center for Bioinformatics and Computational Biology
>>> Shanghai Key Laboratory of Regulatory Biology
>>> Institute of Biomedical Sciences and School of Life Sciences
>>> East China Normal University
>>> Minhang Campus: 500 Dongchuan RD., Shanghai 200241
>>> 
>>> 
>>> 
>>> 
>>> <20170720_psi-qc-cv_0_0_11.obo><20170720_qc-metric-collection_with_NIST.XLSX>------------------------------------------------------------------------------
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>> 
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