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Re: [Psidev-qc-dev] Upcoming teleconference Friday 21/06
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From: Reza S. <re...@eb...> - 2017-07-21 08:05:23
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Dear all, I will join a bit late today, Wout do you know if Jan is joining as well? Best Wishes, Reza > On 21 Jul 2017, at 08:55, Wout Bittremieux <wou...@ua...> wrote: > > Dear colleagues, > > Please find attached a (very limited) example qcML file for the iMonDB. There is still a lot of important information missing, but the most important discussion point is how to represent these instrument parameters and statistical summary values. > > According to last month's discussion I've represented the summary statistics as a single quality parameter containing multiple values. > > Currently there are no CV terms yet to represent instrument parameters. As there are 100s of different instrument parameters for each different instrument model I typically don't try to interpret these metrics. Therefore I think a general CV term denoting an "instrument parameter" could suffice in this case. And I've specified which parameter we're dealing with as the value of the XML element. > I'm not sure whether or not this would be the best strategy, so this is open for consideration. > > I have also some remarks and uncertainties related to Mathias' example file (available on GitHub) to be discussed. > > Thanks, > Wout > <imondb.qcml> > > >> On 21 Jul 2017, at 09:36, Martin Eisenacher via Psidev-qc-dev <psi...@li...> wrote: >> >> Dear all, >> >> as discussed, I changed the ‚quartile‘ and ‚percentile’ CV terms to general ‘n-tuple’ terms, >> for the attached obo file there is also a pull request in the github. >> >> Best regards >> Martin >> >> Von: Jinmeng Jia [mailto:jia...@16...] >> Gesendet: Freitag, 21. Juli 2017 06:29 >> An: psi...@li... >> Betreff: Re: [Psidev-qc-dev] Upcoming teleconference Friday 21/06 >> >> >> Hi everyone, >> >> Unfortunately I will not be able to attend today's TC. I have just been informed that I have to attend an award ceremony this afternoon, as I need to receive the award in person. My apologies! >> >> Best, >> >> Jinmeng >> >> >> >> >> At 2017-07-17 23:30:19, "Wout Bittremieux" <wou...@ua...> wrote: >> >>> Dear colleagues, >>> >>> This is a reminder that our next teleconference is scheduled for Friday, July 21st, at 9:00 GMT (10:00 British Summer Time, 11:00 Western Europe & South Africa, 17:00 China). >>> >>> You can connect to our teleconference on Google Hangouts through the following link: https://hangouts.google.com/group/taNzRy6ELMDK9wbk2 >>> >>> Provisional agenda items are: >>> - continued coordination between the CV and MIAPE-QC >>> - evaluate the CV in terms of OpenMS & iMonDB examples by Mathias & Wout >>> - report on new developments at Metabolomics Brisbane >>> - any additional items that need to be discussed... >>> >>> I hope to talk to all of you on Friday. >>> >>> Best, >>> Wout >> >> >> >> >> >> -- >> Jinmeng, Jia >> Ph.D. candidate,Tieliu Shi's Lab >> Center for Bioinformatics and Computational Biology >> Shanghai Key Laboratory of Regulatory Biology >> Institute of Biomedical Sciences and School of Life Sciences >> East China Normal University >> Minhang Campus: 500 Dongchuan RD., Shanghai 200241 >> >> >> >> >> <20170720_psi-qc-cv_0_0_11.obo><20170720_qc-metric-collection_with_NIST.XLSX>------------------------------------------------------------------------------ >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, Slashdot.org! http://sdm.link/slashdot >> _______________________________________________ >> Psidev-qc-dev mailing list >> Psi...@li... >> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
