Re: [Psidev-pi-dev] [Psidev-ms-dev] Release candidate 4.0.12_rc2 of psi-ms.obo

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Hi,

out of curiosity, does the MS know which LC it is coupled to ?

Is the difference between "6530A Q-TOF LC/MS" and "6530B Q-TOF LC/MS"
in the MS or LC side ? And what is it called if I shoehorn 
A Waters UPLC in front of it ? 

What I am trying to say is that unless these instrument models 
are in one box, or at least such that e.g. Proteoziward msconvert 
can distinguish them, it might be good to have separate Terms 
for the LC and MS parts of the setup. 

Just my 2c,
Yours,
Steffen

On Wed, 2017-05-10 at 12:47 +0200, mayerg97 wrote:
> Dear proteomics community,
> 
> attached there's the release candidate 4.0.12_rc2 of the psi-ms.obo
> file.
> It contains new terms for Agilent instruments.
> 
> New CV terms in version 4.0.12_rc2 of psi-ms.obo:
> =================================================
> [Term]
> id: MS:1002783
> name: 6550 iFunnel Q-TOF LC/MS
> def: "The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002784
> name: 6550A iFunnel Q-TOF LC/MS
> def: "The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002785
> name: 6520B Q-TOF LC/MS
> def: "The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002786
> name: 6530A Q-TOF LC/MS
> def: "The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> [Term]
> id: MS:1002787
> name: 6530B Q-TOF LC/MS
> def: "The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> [Term]
> id: MS:1002788
> name: 6538 Q-TOF LC/MS
> def: "The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> [Term]
> id: MS:1002789
> name: 6540 Q-TOF LC/MS
> def: "The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> [Term]
> id: MS:1002790
> name: 6542 Q-TOF LC/MS
> def: "The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> [Term]
> id: MS:1002791
> name: 6545 Q-TOF LC/MS
> def: "The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> [Term]
> id: MS:1002792
> name: 6560 Q-TOF LC/MS
> def: "The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> [Term]
> id: MS:1002793
> name: 6570 Q-TOF LC/MS
> def: "The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002794
> name: 6120B Quadrupole LC/MS
> def: "The 6120B Quadrupole LC/MS system is a Agilent liquid
> chromatography instrument combined with a single quadrupole mass
> spectrometer from the 6100 Series of Agilent mass spectrometers."
> [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002795
> name: 6150 Quadrupole LC/MS
> def: "The 6150 Quadrupole LC/MS system is a Agilent liquid
> chromatography instrument combined with a single quadrupole mass
> spectrometer from the 6100 Series of Agilent mass spectrometers."
> [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002796
> name: 6224 Time-of-Flight LC/MS
> def: "The 6224 Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002797
> name: 6230A Time-of-Flight LC/MS
> def: "The 6230A Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002798
> name: 6230B Time-of-Flight LC/MS
> def: "The 6230B Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002799
> name: 6430 Triple Quadrupole LC/MS
> def: "The 6430 Quadrupole LC/MS system is a Agilent liquid
> chromatography instrument combined with a Agilent triple quadrupole
> mass spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002800
> name: 6495A Triple Quadrupole LC/MS
> def: "The 6495A Quadrupole LC/MS system is a Agilent liquid
> chromatography instrument combined with a Agilent triple quadrupole
> mass spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002801
> name: 6495B Triple Quadrupole LC/MS
> def: "The 6495B Quadrupole LC/MS system is a Agilent liquid
> chromatography instrument combined with a Agilent triple quadrupole
> mass spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002802
> name: 7000A Triple Quadrupole GC/MS
> def: "The 7000A Quadrupole GC/MS system is a Agilent gas
> chromatography instrument combined with a Agilent triple quadrupole
> mass spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002803
> name: 7000B Triple Quadrupole GC/MS
> def: "The 7000B Quadrupole GC/MS system is a Agilent gas
> chromatography instrument combined with a Agilent triple quadrupole
> mass spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002804
> name: 7800 Quadrupole ICP-MS
> def: "The 7800 Quadrupole ICP-MS system is a Agilent inductively
> couple plasma instrument combined with a Agilent quadrupole mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> [Term]
> id: MS:1002805
> name: 8800 Triple Quadrupole ICP-MS
> def: "The 8800 Quadrupole ICP-MS system is a Agilent inductively
> couple plasma instrument combined with a Agilent quadrupole mass
> spectrometer." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> 
> 
> Changed CV terms in version 4.0.12_rc2 of psi-ms.obo:
> =====================================================
> ************ 6120 --> 6120A
> [Term]
> id: MS:1000469
> name: 6120A Quadrupole LC/MS
> def: "The 6120A Quadrupole LC/MS system is a Agilent liquid
> chromatography instrument combined with a single quadrupole mass
> spectrometer from the 6100 Series of Agilent mass spectrometers. 6120
> quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan
> speed and utilizes multiple signal acquisition." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> ************ 6520 --> 6520A
> [Term]
> id: MS:1000677
> name: 6520A Quadrupole Time-of-Flight LC/MS
> def: "The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid
> chromatography instrument combined with a Agilent time of flight mass
> spectrometer. This time of flight mass spectrometer has a m/z range
> of 50-12000, mass accuracy of less than 2 ppm and resolution greater
> than 26,000 at m/z 2722. It has multiple ion sources and can be used
> with multimode ion sources." [PSI:MS]
> is_a: MS:1000490 ! Agilent instrument model
> 
> Best Regards,
> Gerhard
> -- 
> --------------------------------------------------------------------
> Dipl. Inform. med., Dipl. Wirtsch. Inf. GERHARD MAYER
> PhD student
> Medizinisches Proteom-Center
> DEPARTMENT Medical Bioinformatics
> Building ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum
> Fon +49 (0)234 32-21006 | Fax +49 (0)234 32-14554
> E-mail ger...@ru...
> www.medizinisches-proteom-center.de
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