[Psidev-pi-dev] Release candidate 4.0.9_rc1 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached there's the release candidate 4.0.9_rc1 of the psi-ms.obo file.

It contains new terms for binary data arrays and their compression
and for spectral library searches.


New CV terms in version 4.0.9_rc1 of psi-ms.obo:
================================================
[Term]
id: MS:1002742
name: noise array
def: "A data array of noise values." [PSI:MS]
xref: binary-data-type:MS\:1000521 "32-bit float"
xref: binary-data-type:MS\:1000523 "64-bit float"
is_a: MS:1000513 ! binary data array

[Term]
id: MS:1002743
name: sampled noise m/z array
def: "A data array of parallel, independent m/z values for a sampling of 
noise across a spectrum (typically much smaller than MS:1000514, the m/z 
array)." [PSI:MS]
xref: binary-data-type:MS\:1000521 "32-bit float"
xref: binary-data-type:MS\:1000523 "64-bit float"
is_a: MS:1000513 ! binary data array
relationship: has_units MS:1000040 ! m/z

[Term]
id: MS:1002744
name: sampled noise intensity array
def: "A data array of intensity values for a sampling of noise across a 
spectrum (for use with MS:0000000, sampled noise m/z array)." [PSI:MS]
xref: binary-data-type:MS\:1000521 "32-bit float"
xref: binary-data-type:MS\:1000523 "64-bit float"
is_a: MS:1000513 ! binary data array
relationship: has_units MS:1000131 ! number of detector counts

[Term]
id: MS:1002745
name: sampled noise baseline array
def: "A data array of signal baseline values (the signal in the absence 
of analytes) for a sampling of noise across a spectrum (for use with 
MS:0000000, sampled noise m/z array)." [PSI:MS]
xref: binary-data-type:MS\:1000521 "32-bit float"
xref: binary-data-type:MS\:1000523 "64-bit float"
is_a: MS:1000513 ! binary data array

[Term]
id: MS:1002746
name: MS-Numpress linear prediction compression followed by zlib compression
def: "Compression using MS-Numpress linear prediction compression and 
zlib." [https://github.com/ms-numpress/ms-numpress]
is_a: MS:1000572 ! binary data compression type

[Term]
id: MS:1002747
name: MS-Numpress positive integer compression followed by zlib compression
def: "Compression using MS-Numpress positive integer compression and 
zlib." [https://github.com/ms-numpress/ms-numpress]
is_a: MS:1000572 ! binary data compression type

[Term]
id: MS:1002748
name: MS-Numpress short logged float compression followed by zlib 
compression
def: "Compression using MS-Numpress short logged float compression and 
zlib." [https://github.com/ms-numpress/ms-numpress]
is_a: MS:1000572 ! binary data compression type

[Term]
id: MS:1002749
name: Mascot:IntegratedSpectralLibrarySearch
def: "Means that Mascot has integrated the search results of database 
and spectral library search into a single data set." [PSI:PI]
xref: value-type:xsd\:boolean "The allowed value-type for this CV term."
is_a: MS:1002095 ! Mascot input parameter

[Term]
id: MS:1002750
name: NIST MSPepSearch
def: "Search tool of the NIST (National Institute of Standrads and 
Technology) for spectral library searches." [PSI:PI]
is_a: MS:1001456 ! analysis software

[Term]
id: MS:1002751
name: NIST MSP format
def: "MSP text format defined by the NIST." [PSI:PI]
is_a: MS:1001347 ! database file formats

[Term]
id: MS:1002752
name: database type spectral library
def: "Database containing spectra." [PSI:PI]
is_a: MS:1001073 ! database type

[Term]
id: MS:1002753
name: value between 0 and 1000 inclusive
def: "Value range for scores." [PSI:PI]
is_a: MS:1002304 ! domain range

[Term]
id: MS:1002754
name: MSPepSearch:score
def: "MSPepSearch score (0 for entirely dissimilar and 1000 for 
identical observed spectrum and library spectrum." [PSI:PI]
is_a: MS:1001143 ! PSM-level search engine specific statistic
relationship: has_order MS:1002108 ! higher score better
relationship: has_domain MS:1002753 ! value between 0 and 1000 inclusive

[Term]
id: MS:1002755
name: combined ms-ms + spectral library search
def: "A combined MS2 (with fragment ions) and spectral library search." 
[PSI:PI]
is_a: MS:1001080 ! search type


Changed CV terms in version 4.0.9_rc1 of psi-ms.obo:
====================================================
************ Changed web link to the new GitHub adress 
https://github.com/ms-numpress/ms-numpress
[Term]
id: MS:1002312
name: MS-Numpress linear prediction compression
def: "Compression using MS-Numpress linear prediction compression." 
[https://github.com/ms-numpress/ms-numpress]
is_a: MS:1000572 ! binary data compression type

[Term]
id: MS:1002313
name: MS-Numpress positive integer compression
def: "Compression using MS-Numpress positive integer compression." 
[https://github.com/ms-numpress/ms-numpress]
is_a: MS:1000572 ! binary data compression type

[Term]
id: MS:1002314
name: MS-Numpress short logged float compression
def: "Compression using MS-Numpress short logged float compression." 
[https://github.com/ms-numpress/ms-numpress]
is_a: MS:1000572 ! binary data compression type

Best Regards,
Gerhard

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

*Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum

*Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554

*E-mail***ger...@ru... <mailto:ger...@ru...>

www.medizinisches-proteom-center.de 
<http://www.medizinisches-proteom-center.de/>