From: Ville K. <vi...@ma...> - 2017-02-15 12:03:45
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Dear list, before moving to GitHub, the psi-ms.obo file's URL was http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psims/mzML/controlledVocabulary/psi-ms.obo The URL appears in a number of mzIdentML example files, of course, as well as the 1.1.0 specification document. But the current URL is now https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo Should newly exported mzIdentML files use the new URL or keep the old URL? How stable is the new URL? For example, in October 2015 the new URL was https://github.com/HUPO-PSI/mzML/blob/master/cv/psi-ms.obo but that's of course now dated. Or does it make any difference what URL is output in the mzIdentML file? The mzIdentML 1.1.0 specification for the <cv> element states the uri attribute is the "URI of the source CV", but doesn't say whether this is for the usual namespace purposes (uniform resource *identifier*) or for the reader of the file to locate the .obo file (uniform resource *locator*). If it's a true URI, is there a table somewhere that records what URIs each type of CV should have? Regards, Ville -- Ville Koskinen Matrix Science 64 Baker Street London W1U 7GB, UK Tel: +44 (0)20 7486 1050 Fax: +44 (0)20 7224 1344 vi...@ma... http://www.matrixscience.com Matrix Science Ltd. is registered in England and Wales Company number 3533898 |