Re: [Psidev-ms-dev] [Psidev-ms-vocab] New version 4.0.7 of psi-ms

[Jones, A. <And...@li...>]

Looks good to me, thanks

From: mayerg97 [mailto:ger...@ru...]
Sent: 30 January 2017 15:39
To: psi...@li...; psi...@li...; psi...@li...
Subject: [Psidev-ms-vocab] New version 4.0.7 of psi-ms


Dear proteomics community,

attached there's the new version 4.0.7 of the psi-ms.obo file.


Changed CV terms in version 4.0.7 of psi-ms.obo:
================================================
************ parent term of the new sub-terms
************ changed the definition
[Term]
id: MS:1001805
name: quantification datatype
def: "The data type of the value reported in a QuantLayer." [PSI:MS]
is_a: MS:1001129 ! quantification information

************ former childs of MS:1001805
************ are now childs of the new sub-terms of MS:1001805, e.g.
[Term]
id: MS:1001842
name: sequence-level spectral count
def: "The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting." [PSI:PI]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1002737 ! peptide-level quantification datatype

[Term]
id: MS:1002733
name: peptide-level spectral count
def: "The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting." [PSI:PI]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1002737 ! peptide-level quantification datatype

[Term]
id: MS:1002734
name: peptide ion-level spectral count
def: "The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting." [PSI:PI]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1002737 ! peptide-level quantification datatype


New CV terms in version 4.0.7 of psi-ms.obo:
============================================
************ added new sub-childs to MS:1001805
[Term]
id: MS:1002735
name: feature-level quantification datatype
def: "The data type of the value reported in a QuantLayer for a feature." [PSI:PI]
is_a: MS:1001805 ! quantification datatype

[Term]
id: MS:1002736
name: PSM-level quantification datatype
def: "The data type of the value reported in a QuantLayer for a PSM." [PSI:PI]
is_a: MS:1001805 ! quantification datatype

[Term]
id: MS:1002737
name: peptide-level quantification datatype
def: "The data type of the value reported in a QuantLayer for a peptide." [PSI:PI]
is_a: MS:1001805 ! quantification datatype

[Term]
id: MS:1002738
name: protein-level quantification datatype
def: "The data type of the value reported in a QuantLayer for a protein." [PSI:PI]
is_a: MS:1001805 ! quantification datatype

[Term]
id: MS:1002739
name: protein group-level quantification datatype
def: "The data type of the value reported in a QuantLayer for a protein group." [PSI:PI]
is_a: MS:1001805 ! quantification datatype

Best Regards,
Gerhard
--

--------------------------------------------------------------------

Dipl. Inform. med., Dipl. Wirtsch. Inf. GERHARD MAYER

PhD student

Medizinisches Proteom-Center

DEPARTMENT Medical Bioinformatics

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E-mail ger...@ru...<mailto:ger...@ru...>

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