[Psidev-pi-dev] New version 4.0.6 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached there's the new version 4.0.6 of the psi-ms.obo file.


Changed CV terms in version 4.0.6 of psi-ms.obo:
================================================
************ Changed
[Term]
id: MS:1001842
name: peptide PSM count
def: "The number of MS2 spectra identified for this peptide in spectral 
counting." [PSI:PI]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1001805 ! quantification datatype

************ into

[Term]
id: MS:1001842
name: sequence-level spectral count
def: "The number of MS2 spectra identified for a raw peptide sequence 
without PTMs and charge state in spectral counting." [PSI:PI]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1001805 ! quantification datatype


New CV terms in version 4.0.6 of psi-ms.obo:
============================================
[Term]
id: MS:1002733
name: peptide-level spectral count
def: "The number of MS2 spectra identified for a peptide sequence 
specified by the amino acid one-letter codes plus optional PTMs in 
spectral counting." [PSI:PI]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1001805 ! quantification datatype

[Term]
id: MS:1002734
name: peptide ion-level spectral count
def: "The number of MS2 spectra identified for a molecular ion defined 
by the peptide sequence represented by the amino acid one-letter codes, 
plus optional PTMs plus optional charged aducts plus the charge state, 
in spectral counting." [PSI:PI]
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1001805 ! quantification datatype

Best Regards,
Gerhard

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

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