[Psidev-pi-dev] [Psi‐announce] Submission of an update of the specifications for mzIdentML 1.2 : open for public review until December, 6th

[Sylvie Ricard-B. <syl...@un...>]

Dear colleague,

Dear member of the Proteomics community,


The update of the specifications for mzIdentML 1.2 is open for public 
review until *December, 6th* and not until November, 6th as mistakenly 
indicated in my previous e-mail copied below.


The public review enables the community to provide feedback on a 
proposed standard before it is formally accepted. It is thus an 
important step in the standardisation process. Both positive and 
negative comments on the relevance, clarity, correctness, and 
appropriateness of the entire document or of specific parts of it are 
welcome.

I invite you to forward this message to interested colleagues and I 
thank you in advance for your valuable contribution to the standards 
development effort.


Best wishes.


Sylvie RICARD-BLUM (PSI editor).

Professor Sylvie RICARD-BLUM
Pericellular and Extracellular Supramolecular Assemblies
UMR 5246 CNRS - University Lyon 1
Institute of Molecular and Supramolecular Chemistry and Biochemistry
Raulin Building - 2nd Floor North
University Claude Bernard Lyon 1
43 Boulevard du 11 novembre 1918
69622 Villeurbanne Cedex, France
Tel : +33(0)4 72 44 82 32
E-mail: syl...@un...


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Le 06/10/2016 12:11, Sylvie Ricard-Blum a écrit :


Dear colleague,

Dear member of the Proteomics community,

The HUPO Proteomics Standards Initiative (PSI) develops standards for 
documentation and storage of proteomics data (see http://www.psidev.info 
for an overview of activities).

The PSI Proteomics Informatics Working Group has submitted an update of 
the specifications for mzIdentML 1.2 to the PSI document process.

The specification document can be found here: 
<https://github.com/HUPO-PSI/mzIdentML/blob/master/specification_document/specdoc1_2/mzIdentML1%202-draft.docx>https://github.com/HUPO-PSI/mzIdentML/blob/master/specification_document/specdoc1_2/mzIdentML1%202-draft.docx


Example files to demonstrate the standard are here: 
https://github.com/HUPO-PSI/mzIdentML/tree/master/examples/1_2examples


The validator is here: 
https://github.com/HUPO-PSI/mzIdentML/blob/master/validator/mzIdentMLValidator_GUI_v1.4.24-SNAPSHOT.zip

After a 30-day review of the PSI steering committee, the proposed 
document now goes through external review phase until *December, 6**^th 
**, 2016*.

The public review enables the community to provide feedback on a 
proposed standard before it is formally accepted. It is thus an 
important step in the standardisation process. Both positive and 
negative comments on the relevance, clarity, correctness, and 
appropriateness of the entire document or of specific parts of it are 
welcome.

Please add comments to the submission page 
(http://www.psidev.info/mzidentml-12-docproc) or send them directly to 
syl...@un... 
<mailto:syl...@un...> with a particular focus on the 
following criteria:

- The document is presented in accordance with the templates and is 
clearly written.

- The document is sufficiently detailed and clearly describes the format.

- The examples are in accordance with the specification.

I invite you to forward this message to interested colleagues and I 
thank you in advance for your valuable contribution to the standards 
development effort.

Best wishes.

Sylvie RICARD-BLUM (PSI editor)

Professor Sylvie RICARD-BLUM

Pericellular and Extracellular Supramolecular Assemblies

UMR 5246 CNRS - University Lyon 1

Institute of Molecular and Supramolecular Chemistry and Biochemistry

Raulin Building - 2^nd Floor North

University Claude Bernard Lyon 1

43 Boulevard du 11 novembre 1918

69622 Villeurbanne Cedex, France

Tel : +33(0)4 72 44 82 32

E-mail: syl...@un... 
<mailto:syl...@un...>

http://www.icbms.fr <http://www.icbms.fr/>

The French Society for Matrix Biology http://www.sfbmec.fr

The International Society for Matrix Biology http://ismb.org