[Psidev-pi-dev] Release candidate 4.0.2_rc1 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached there's the new version 4.0.2_rc1 of the psi-ms.obo file.

It contains new terms for the Pegasus BT instrument and for MSPathFinder 
scores

New CV terms in version 4.0.2_rc1 of psi-ms.obo:
================================================
************ New instrument term
[Term]
id: MS:1002719
name: Pegasus BT
def: "LECO bench-top GC time-of-flight mass spectrometer." [PSI:PI]
is_a: MS:1001800 ! LECO instrument model

************ New terms for MSPathFinder scores
[Term]
id: MS:1002720
name: MSPathFinder
def: "PNNL top-down/bottom-up analysis software for identifying peptides 
and proteoforms in fragmentation mass spectra." [PSI:PI]
is_a: MS:1001456 ! analysis software

[Term]
id: MS:1002721
name: MSPathFinder:SpecEValue
def: "MSPathFinder spectral E-value." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002353 ! PSM-level e-value
is_a: MS:1001143 ! PSM-level search engine specific statistic
relationship: has_order MS:1002109 ! lower score better

[Term]
id: MS:1002722
name: MSPathFinder:EValue
def: "MSPathFinder E-value." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002353 ! PSM-level e-value
is_a: MS:1001143 ! PSM-level search engine specific statistic
relationship: has_order MS:1002109 ! lower score better

[Term]
id: MS:1002723
name: MSPathFinder:QValue
def: "MSPathFinder Q-value." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002354 ! PSM-level q-value
is_a: MS:1001143 ! PSM-level search engine specific statistic

[Term]
id: MS:1002724
name: MSPathFinder:PepQValue
def: "MSPathFinder peptide-level Q-value." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! PSM-level search engine specific statistic

[Term]
id: MS:1002725
name: MSMSPathFinderGF:RawScore
def: "MSPathFinder raw score." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! PSM-level search engine specific statistic


Changed CV terms in version 4.0.2_rc1 of psi-ms.obo:
====================================================
************ Changed the name and definition
[Term]
id: MS:1002678
name: supplemental beam-type collision-induced dissociation
def: "A supplemental collision-induced dissociation process that occurs 
in a beam-type collision cell in addition to another primary type of 
dissociation." [PSI:MS]
is_a: MS:1000422 ! beam-type collision-induced dissociation

************ Changed is_a: MS:1000044 ! dissociation method
************ into    is_a: MS:1000133 ! collision-induced dissociation
[Term]
id: MS:1002679
name: supplemental collision-induced dissociation
def: "The dissociation of an ion after supplemental collisional 
excitation." [PSI:MS]
is_a: MS:1000133 ! collision-induced dissociation

Best Regards,
Gerhard

-- 

*--------------------------------------------------------------------*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

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