Re: [Psidev-pi-dev] mzid 1.2 specs

[mayerg97 <ger...@ru...>]

Hello Andy,

I updated now the mzid 1.2 spec doc (table 2 and the following examples 
for the different use cases
(proteogenomics, cross-linking, protein grouping, modification scoring, 
peptide-level scoring):
- SpectrumIdentificationProtocol (AdditionalSearchParams)
                                     peptide-level statistics
                                     sample pre-fractionation
                                     proteogenomics
                                     cross-linking
                                     modification position scoring
                                     de novo sequencing
                                     consensus scoring
- PeptideEvidence                    proteogenomics
- DBSequence                        proteogenomics
- SpectrumIdentificationItem        peptide-level statistics
                                     cross-linking
- Peptide                            cross-linking
- ProteinDetectionHypothesis        protein grouping
- ProteinAmbiguityGroup                protein grouping
- Peptide                            cross-linking
- Modification                        cross-linking

Cheers,
Gerhard


Am 09.06.2016 um 13:13 schrieb Jones, Andy:
>
> Hi Gerhard,
>
> I have just pushed a few minor changes to the mzid 1.2 spec document 
> to GitHub. Would you mind taking over with the document and having a 
> general check through the text, and updating section 6. This will need 
> for you to coordinate for Eric to re-run the auto-generator, insert 
> the result, and then we may wish to manually add snippets of XML to 
> the following sections with an example snippet illustrating the 
> different use cases (proteogenomics, cross-linking, protein grouping, 
> modification scoring, peptide-level scoring):
>
> -SpectrumIdentificationProtocol
>
> -PeptideEvidence
>
> -DBSequence
>
> -SpectrumIdentificationItem
>
> -Peptide
>
> -ProteinDetectionHypothesis
>
> -ProteinAmbiguityGroup
>
> Many thanks
>
> Andy
>

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