[Psidev-ms-dev] Release candidate 3.90.0_rc2

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached there's the release candidate 3.90.0_rc2 of the psi-ms.obo file
containing new terms for the annotation of cross-linking files and for 
supplemental, activation.


New CV terms in version 3.90.0_rc2 of psi-ms.obo:
=================================================
************ terms for cross-linking annotation
[Term]
id: MS:1002675
name: cross-linking result details
def: "This subsection describes terms which can describe details of 
cross-linking results." [PSI:PI]
relationship: part_of MS:1001000 ! spectrum interpretation

[Term]
id: MS:1002676
name: protein-pair-level global FDR
def: "Estimation of the global false discovery rate of proteins-pairs in 
cross-linking experiments." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002675 ! cross-linking result details
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive

[Term]
id: MS:1002677
name: residue-pair-level global FDR
def: "Estimation of the global false discovery rate of residue-pairs in 
cross-linking experiments." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002675 ! cross-linking result details
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive

************ Terms for supplemental activation
************ @Matt: When I uderstood you correctly, the supplemental 
terms are needed only for HCD and CID, is that correct ?
[Term]
id: MS:1002678
name: supplemental higher energy beam-type collision-induced dissociation
def: "A supplemental collision-induced dissociation process wherein the 
projectile ion has the translational energy higher than approximately 
1000 eV." [PSI:MS]
is_a: MS:1000422 ! beam-type collision-induced dissociation

[Term]
id: MS:1002679
name: supplemental collision-induced dissociation
def: "The dissociation of an ion after supplemental collisional 
excitation." [PSI:MS]
is_a: MS:1000044 ! dissociation method

[Term]
id: MS:1002680
name: supplemental collision energy
def: "Energy for an ion experiencing supplemental collision with a 
stationary gas particle resulting in dissociation of the ion." [PSI:MS]
xref: value-type:xsd\:float "The allowed value-type for this CV term."
is_a: MS:1000510 ! precursor activation attribute
relationship: has_units UO:0000266 ! electronvolt

Best Regards,
Gerhard
-- 

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*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

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