Re: [Psidev-qc-dev] Organizational roundup

[weimin z. <wmz...@gm...>]

sorry, I missed this email thread. to re-phrase my commitment: yes, I
confirm to take the role in miape-like qc document. any solid timeline to
have the first version to roll out? - weimin

On Fri, May 27, 2016 at 5:54 PM, Martin Eisenacher <mar...@ru...
> wrote:

> Hi!
>
>
>
> I can do the Ontology Coord.,
>
> if we come to the conclusion that it fits into the current PSI-MS/-PI
> ontology, Gerhard should be the executive.
>
>
>
> Bye from Bochum
>
>    Martin
>
>
>
>
>
> *--*
>
> *PD DR. MARTIN EISENACHER*
>
> *Department Leader*
>
> *DEPARTMENT Medical Bioinformatics*
>
> *Medizinisches Proteom-Center*
>
> *Ruhr-University Bochum*
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>
>
>
> ANNOUNCEMENT de.NBI summer school September 2016:
>
> *Analysis of Mass-Spectrometric Data - *
>
> *Big Data Bioinformatics in Proteomics and Metabolomics*
>
> http://www.denbi.de/index.php/11-training-cat/95-lss2016
>
>
>
>
>
>
>
> *Von:* Tabb, David, Prof <dt...@su...> [mailto:dt...@su...]
> *Gesendet:* Mittwoch, 18. Mai 2016 14:18
> *An:* psi...@li...
> *Betreff:* Re: [Psidev-qc-dev] Organizational roundup
>
>
>
> Hi, folks.
>
>
>
> I would like some feedback on this slate so that we can finalize our
> charter before I leave for the United States next Tuesday.  If you would
> like to completely alter the associations of names with positions, that’s
> absolutely fine.  I do want some feedback before I tell HUPO this is what
> we’re going to try, though.
>
>
>
> I would really value some emails such as, “yes, I am willing to fill that
> role” or “no, that doesn’t sound like a good role for me.”
>
>
>
> Thank you!
>
> Dave
>
>
>
> *From:* Tabb, David, Prof <dt...@su...> [mailto:dt...@su...
> <dt...@su...>]
> *Sent:* Friday, 06 May 2016 08:35
> *To:* psi...@li...
> *Subject:* [Psidev-qc-dev] Organizational roundup
>
>
>
> Hello, all!
>
>
>
> I am thrilled to have worked with you all at Ghent on April 19th!  It is
> very refreshing to work with a group so willing to contribute to this new
> effort.
>
>
>
> For a first goal, I would like to nominate some roles for the core group
> of individuals who volunteered at the meeting.  I am using roles borrowed
> from this grid: http://www.psidev.info/roles.
>
>
>
> Chair: David Tabb
>
> Website/Co-Chair: Mathias Walzer
>
> Editor/Co-Chair: Stefan Tenzer
>
> Minimum Reporting Requirements: Weimin Zhu
>
> Ontology: Martin Eisenacher
>
> Secretary: Wout Bittremieux
>
>
>
> My rationale looks like this:
>
> We range considerably in our experience as researchers.  I understand that
> senior folks are going to have deeply split attention (my slow reply after
> Ghent reflects one example; I was teaching a solo four-day blitz in
> bioinformatics to the Honours students down here).  I know that we must
> have the enthusiasm and energy of the younger folks to drive this project
> to 1.0.  I propose myself as chair because I value time very deeply, and I
> intend to keep our meetings on-point and short!  J
>
>
>
> I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I
> appreciate his establishing the GitHub site so rapidly.  His initial
> development of the draft format is an impressive beginning upon which we
> can build.  I think he will be an able co-chair.  Given his attention to
> GitHub, I think he will be well-placed to ensure our group is
> well-represented on the HUPO-PSI website.
>
>
>
> Stefan Tenzer has volunteered to co-chair, and I appreciated the
> contributions he was able to make in the morning of our session.  I think
> he will be a solid member of the team.  I have also volunteered him as the
> editor for our team, which is a role that may require considerable effort
> since it involves document process management (
> http://www.psidev.info/groups/psi-editors).
>
>
>
> Weimin Zhu has plenty of valuable experience from the mzData effort, and I
> think he would have good thoughts on which aspects of quality reporting are
> essential to a minimal report.
>
>
>
> Martin Eisenacher seems to have highly relevant experience in format
> specificiation and ontology management.  If he is willing to serve as our
> Ontology lead, we will be fortunate!
>
>
>
> Wout Bittremieux has already made great contributions to the software
> library aspect of the qcML format.  I hope he will be willing to work on
> our meeting reports (and assist in the construction of our various
> manuscripts).
>
>
>
> If you would like to request a modified role or propose an altogether
> different roster, I would be happy to hear it.  I have not been
> organizationally involved with HUPO-PSI in the past, so I may not have the
> most useful experience for framing such a candidate slate.
>
>
>
> Yes, I will attend ASMS in San Antonio, and I think that’s a great
> deadline for immediate goals.  I would like to knock together an outline
> for the perspective/announcement.
>
>
>
> Mathias, I liked your idea about sending an invite/announcement to the
> other HUPO-PSI groups.
>
>
>
> We should start soon on identifying the major use cases for qcML and the
> applicability of various metrics to that purpose.  I particularly want to
> look at experimental types that are currently uncovered by quality metrics
> (such as top-down and DIA).
>
>
>
> Thank you all for your willingness to take part in this push!
>
> Dave
>
>
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