[Psidev-pi-dev] New version 3.87.0 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached there's the new version 3.87.0 of the psi-ms.obo file.


New CV terms in version 3.87.0 of psi-ms.obo:
=============================================
[Term]
id: MS:1002659
name: UniProtKB text sequence format
def: "Text-based format used by UniProtKB for sequence entries." [PSI:PI]
xref: SWO:http://edamontology.org/format_2187
is_a: MS:1001347 ! database file formats

[Term]
id: MS:1002660
name: UniProtKB XML sequence format
def: "XML-based format used by UniProtKB for sequence entries." [PSI:PI]
is_a: MS:1001347 ! database file formats

[Term]
id: MS:1002661
name: Morpheus
def: "Morpheus search engine." [PMID:23323968]
is_a: MS:1001456 ! analysis software

[Term]
id: MS:1002662
name: Morpheus:Morpheus score
def: "Morpheus score for PSMs." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for PSMs
is_a: MS:1001153 ! search engine specific score
is_a: MS:1001405 ! spectrum identification result details
relationship: has_order MS:1002108 ! higher score better

[Term]
id: MS:1002663
name: Morpheus:summed Morpheus score
def: "Summed Morpheus score for protein groups." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002368 ! search engine specific score for protein groups
is_a: MS:1001153 ! search engine specific score
is_a: MS:1001147 ! protein ambiguity group result details
relationship: has_order MS:1002108 ! higher score better

[Term]
id: MS:1002664
name: protein interaction scores derived from cross-linking
def: "Parent term for protein interaction scores derived from 
cross-linking." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002508 ! cross-linking attribute
relationship: has_regexp MS:1002665 ! 
([:digit:]+[.][a|b]:[:digit:]+:[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\{1\})

[Term]
id: MS:1002665
name: regular expression for protein interaction scores derived from 
cross-linking
def: 
"([:digit:]+[.][a|b]:[:digit:]+:[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\{1\})" 
[PSI:PI]
is_a: MS:1002479 ! regular expression


Changed CV terms in version 3.87.0 of psi-ms.obo:
=================================================
************ added is_a: MS:1001405 ! spectrum identification result details
[Term]
id: MS:1002600
name: PRIDE XML
def: "Internal data and submission format of the PRIDE database." 
[http://ftp.pride.ebi.ac.uk/pride/resources/schema/pride/pride.xsd]
is_a: MS:1002130 ! identification file format
is_a: MS:1001405 ! spectrum identification result details

************ obsoleted the following term
[Term]
id: MS:1002639
name: peptide start on chromosome
def: "OBSOLETE The overall start position on the chromosome to which a 
peptide has been mapped i.e. the position of the first base of the first 
codon, using a zero-based counting system." [PSI:PI]
comment: This term was obsoleted because it contains redundant info 
contained in term MS:1002643 - peptide start positions on chromosome.
xref: value-type:xsd\:int "The allowed value-type for this CV term."
is_a: MS:1002636 ! proteogenomics attribute
is_obsolete: true


Best Regards,
Gerhard

-- 

*--*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

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