[Psidev-ms-dev] Version 3.86.2 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached there's the new version 3.86.2 of the psi-ms.obo file.


Changed CV terms in version 3.86.2 of psi-ms.obo:
=================================================
************ Updated the import links to pato.obo and unit.obo (pointing 
now to GitHub)
import: https://raw.githubusercontent.com/pato-ontology/pato/master/pato.obo
import: 
https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo
remark: URL: 
https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo


************ Renamed cross-link receiver --> cross-link acceptor
[Term]
id: MS:1002510
name: cross-link acceptor
def: "Cross-linking acceptor, assigned according to the following rules: 
the export software SHOULD use the following rules to choose the 
cross-link donor as the: longer peptide, then higher peptide neutral 
mass, then alphabetical order." [PSI:PI]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1002508 ! cross-linking attribute

*********** Changed the regular expression
[Term]
id: MS:1002505
name: regular expression for modification localization scoring
def: 
"([:digit:]+:[0|1]\{1\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\{1\}[:digit:]+:(true|false)\{1\})" 
[PSI:PI]
is_a: MS:1002479 ! regular expression

************ Re-added units to the following two terms
[Term]
id: MS:1002225
name: average product ion intensity
def: "Average value of product ion intensity in a collection of 
identified spectra." [PSI:PI]
is_a: MS:1001226 ! product ion intensity
relationship: has_units MS:1000131 ! number of detector counts
relationship: has_units MS:1000132 ! percent of base peak
relationship: has_units MS:1000814 ! counts per second
relationship: has_units MS:1000905 ! percent of base peak times 100

[Term]
id: MS:1002226
name: product ion intensity standard deviation
def: "Standard deviation of product ion intensity in a collection of 
identified spectra." [PSI:PI]
is_a: MS:1001226 ! product ion intensity
relationship: has_units MS:1000131 ! number of detector counts
relationship: has_units MS:1000132 ! percent of base peak
relationship: has_units MS:1000814 ! counts per second
relationship: has_units MS:1000905 ! percent of base peak times 100

Best Regards,
Gerhard

-- 

*--*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

*Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum

*Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554

*E-mail***ger...@ru... <mailto:ger...@ru...>

www.medizinisches-proteom-center.de 
<http://www.medizinisches-proteom-center.de/>