Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Multiple search engine encoding (#5)

[Salvador M. de B. <not...@gi...>]

But, then, what about the search parameters? In case of having a single mzIdentML file with a single SIList merging PSMs coming from different searches with different parameters, can we have in AnalysisCollection, two different SpectrumIdentification elements referencing to different SpectrumIdentificationProtocols (different search parameters) and same SIList? like:
```
...
<SpectrumIdentificationList id="SIL_1"> ... </>
...
<AnalysisCollection>
   <SpectrumIdentification spectrumIdentificationProtocol_ref="parameters_1" spectrumIdentificationList_ref="SIL_1"> ... </>
   <SpectrumIdentification spectrumIdentificationProtocol_ref="parameters_2" spectrumIdentificationList_ref="SIL_1"> ... </>
</AnalysisCollection>
...
```
In this case, we lose the ability to know with which parameters an specific PSM was searched, right? We know that SIL_1 is the combination of 2 searches, but each PSM we don't know from which one is coming from.


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