Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Cross-linking CV (#2)

[Lutz F. <not...@gi...>]

@andrewrobertjones if we put the info on individual proteins we probably need to flag up the site as well. Otherwise we have problems to distinguish a link that could come from protein A residue X and could end in either protein B residue Y OR protein C residue Z. E.g. extend the info to
INTERACTION_PAIR_ID:CROSSLINK_ID:SITE_ID:PROTEIN_SEQ_POSTION:SCORE:PASS_THRESHOLD

As to if we need a another info on protein group level - I would say yes. A link could have a 5% chance of being wrong - bit the supported protein interaction could actually have something a lot worse or better than that. So we would want to be able to flag that up as well.

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