Re: [Psidev-pi-dev] [HUPO-PSI/mzIdentML] Multiple search engine encoding (#5)

[Mathias W. <not...@gi...>]

> If the lists are kept separate (in one file with 2 lists) or 2 files (with one list), a reader might double count the number of spectra queried (and possibly over count PSMs), or would need its own logic for combining the same spectrum in different list - which would probably not exist.

I agree with Andy here, _not_ having separate lists reduces the number of ways a reader could interpret the consumed mzid(s)

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