[Psidev-pi-dev] [HUPO-PSI/qcML-development] Feature/metrics drafts (#21)

[Mathias W. <not...@gi...>]

based on M. Eisenacher's table from PSI-Meeting.
collect metrics, describe them
You can view, comment on, or merge this pull request online at:

  https://github.com/HUPO-PSI/qcML-development/pull/21

-- Commit Summary --

  * restructuring: moved old parts of development to legacy folder, created specification_document folder and version specific folders in schema, moved those schema files there with examples and images
  * added schema with changes reflecting the discussions at PSI spring meeting Ghent 2016 with generated example instance
  * added README.md and a qc-metric-collection
  * Update README.md
  * replaced special characters < >

-- File Changes --

    A cv/README.md (21)
    A cv/qc-metric-collection.md (65)
    R legacy/pipelines/KNIME Metanodes/Metanode id_ratio.zip (0)
    R legacy/pipelines/KNIME Metanodes/Metanode mass_accuracy.zip (0)
    R legacy/pipelines/KNIME Metanodes/Metanode peptide_featurespace.zip (0)
    R legacy/pipelines/KNIME Metanodes/Metanode tic_plot.zip (0)
    R legacy/pipelines/detailed QC workflow.zip (0)
    R legacy/pipelines/simple QC workflow.zip (0)
    R legacy/qcdb/converters/qcml2qcdb.py (0)
    R legacy/qcdb/schema/MzQuality_Object_model.png (0)
    R legacy/qcdb/schema/le_er_model_sqlite.sql (0)
    R legacy/qcdb/schema/qcDB_er_model.png (0)
    R legacy/website-images/Alternate qcml implementation zoo.png (0)
    R legacy/website-images/check_file_inputs.jpg (0)
    R legacy/website-images/detailed_workflow_extractATgkn.png (0)
    R legacy/website-images/detailed_workflow_extractATopenms.png (0)
    R legacy/website-images/detailed_workflow_extractQPxml.png (0)
    R legacy/website-images/detailed_workflow_fractionalmasses.png (0)
    R legacy/website-images/detailed_workflow_idratio.png (0)
    R legacy/website-images/detailed_workflow_massaccuracy.png (0)
    R legacy/website-images/detailed_workflow_openreport.png (0)
    R legacy/website-images/detailed_workflow_overview.png (0)
    R legacy/website-images/detailed_workflow_preprocessing.png (0)
    R legacy/website-images/detailed_workflow_pt1.png (0)
    R legacy/website-images/detailed_workflow_pt2.png (0)
    R legacy/website-images/detailed_workflow_pt3.png (0)
    R legacy/website-images/detailed_workflow_pt4.png (0)
    R legacy/website-images/detailed_workflow_pt5.png (0)
    R legacy/website-images/detailed_workflow_tic.png (0)
    R legacy/website-images/import_knime_workflow.jpg (0)
    R legacy/website-images/import_knime_workflow_2.jpg (0)
    R legacy/website-images/knimeinstallmenu1.png (0)
    R legacy/website-images/knimeinstallmenu2.png (0)
    R legacy/website-images/primexs.png (0)
    R legacy/website-images/qc_workflow_knime.png (0)
    R legacy/website-images/qc_workflow_knime_pt1.png (0)
    R legacy/website-images/qc_workflow_knime_pt2.png (0)
    R legacy/website-images/qc_workflow_knime_pt3.png (0)
    R legacy/website-images/qc_workflow_knime_pt4.png (0)
    R legacy/website-images/qc_workflow_knime_pt5.png (0)
    R legacy/website-images/qc_workflow_knime_pt6.png (0)
    R legacy/website-images/qc_workflow_knime_pt7.png (0)
    R legacy/website-images/qcml_illusrt.png (0)
    R schema/old/example/input/additional_tabular_data.csv (0)
    R schema/old/example/input/additional_tabular_mapping.csv (0)
    R schema/old/example/input/ecoli.fasta (0)
    R schema/old/example/input/theoretical_masses.txt (0)
    R schema/old/example/plots/accuracy.png (0)
    R schema/old/example/plots/spec.png (0)
    R schema/old/example/plots/theoretical_masses_vs_features.png (0)
    R schema/old/example/plots/tic.png (0)
    R schema/old/example/qcML_examlple.xml (0)
    R schema/old/example/qcML_manual_examlple.xml (0)
    R schema/old/example/report.pdf (0)
    R schema/old/example/tables/20100219_SvNa_SA_Ecoli_QCCalculator.tsv_id.tsv (0)
    R schema/v0_0_5/mzQCML_0.0.5.png (0)
    R schema/v0_0_5/mzQCML_0_0_5.xsd (0)
    R schema/v0_0_6/examples/samplefile_0_0_6.qcML (0)
    R schema/v0_0_6/mzQCML_0.0.6.png (0)
    R schema/v0_0_6/mzQCML_0_0_6.xsd (0)
    R schema/v0_0_7/examples/samplefile_0_0_7.qcML (0)
    R schema/v0_0_7/qcML_0.0.7.xsd (0)
    R schema/v0_0_8/examples/samplefile_0_0_8.qcML (0)
    R schema/v0_0_8/images/qcml_at.png (0)
    R schema/v0_0_8/images/qcml_cvlist.png (0)
    R schema/v0_0_8/images/qcml_qp.png (0)
    R schema/v0_0_8/images/qcml_root.png (0)
    R schema/v0_0_8/qcML_0.0.8.xsd (0)
    A schema/v0_0_9/examples/qcML_0_0_9_instance1.xml (33)
    A schema/v0_0_9/qcML_0_0_9.xsd (288)

-- Patch Links --

https://github.com/HUPO-PSI/qcML-development/pull/21.patch
https://github.com/HUPO-PSI/qcML-development/pull/21.diff

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