Re: [Psidev-pi-dev] [Psidev-ms-dev] Version 3.86.1 of psi-ms.obo

[Eric D. <ede...@sy...>]

Thanks, Gerhard!

Although I didn’t make it explicit in my earlier message, I think these two
terms need the same units as 1226:

[Term]
id: MS:1002225
name: average product ion intensity
def: "Average value of product ion intensity in a collection of identified
spectra." [PSI:PI]
is_a: MS:1001226 ! product ion intensity

[Term]
id: MS:1002226
name: product ion intensity standard deviation
def: "Standard deviation of product ion intensity in a collection of
identified spectra." [PSI:PI]
is_a: MS:1001226 ! product ion intensity



*From:* mayerg97 [mailto:ger...@ru...]
*Sent:* Wednesday, April 27, 2016 4:50 AM
*To:* psi...@li...;
psi...@li...; psi...@li...
*Subject:* [Psidev-ms-dev] Version 3.86.1 of psi-ms.obo



Dear proteomics community,

attached there's the new version 3.86.1 of the psi-ms.obo file.


Changed CV terms in version 3.86.1 of psi-ms.obo:
=================================================
************ Added units again to the terms MS:10000904 and MS:1001226
[Term]
id: MS:1000904
name: product ion m/z delta
def: "The difference in m/z of the predicted m/z based on the assigned
product ion minus the actual observed peak m/z." [PSI:PI]
is_a: MS:1001221 ! fragmentation information
relationship: has_units MS:1000040 ! m/z

[Term]
id: MS:1001226
name: product ion intensity
def: "The intensity of a single product ion." [PSI:PI]
synonym: "fragment ion intensity" EXACT []
is_a: MS:1001221 ! fragmentation information
relationship: has_units MS:1000131 ! number of detector counts
relationship: has_units MS:1000132 ! percent of base peak
relationship: has_units MS:1000814 ! counts per second
relationship: has_units MS:1000905 ! percent of base peak times 100

************ Added value type to all child terms of MS:1002646 ! native
spectrum identifier format, combined spectra
to allow specification of the comma separated list of spectra

************ Changed regular expression of term MS:1002505
************ to allow scientific notation of the modification localization
score
[Term]
id: MS:1002505
name: regular expression for modification localization scoring
def:
"([:digit:]+:[0|1]\{1\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]+:[:digit:]+[|]\{1\}[:digit:]+:(true|false)\{1\})"
[PSI:PI]
is_a: MS:1002479 ! regular expression

Best Regards,
Gerhard

-- 

*--*

*Dipl. Inform. med., Dipl. Wirtsch. Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

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