[Psidev-ms-dev] New version 3.83.0 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,


here's the latest version 3.83.0 of the psi-ms.obo file.
It contains new terms for PRIDE XML, mzTab and labelling reagents, see

https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo


New CV terms in version 3.83.0 of psi-ms.obo:
=============================================
[Term]
id: MS:1002600
name: PRIDE XML
def: "Internal data and submission format of the PRIDE database." 
[http://ftp.pride.ebi.ac.uk/pride/resources/schema/pride/pride.xsd]
is_a: MS:1002130 ! identification file format

[Term]
id: MS:1002601
name: mzTab
def: "Tabular result format for proteomics and metabolomics 
experiments." [PMID:24980485, http://www.psidev.info/mztab/]
is_a: MS:1000914 ! tab delimited text format

[Term]
id: MS:1002602
name: quantification reagent
def: "Reagent used in labeled quantification methods." [PSI:PI]
is_a: MS:1002111 ! assay label attribute
is_a: MS:1000548 ! sample attribute

[Term]
id: MS:1002603
name: ICAT reagent
def: "Isotope coded affinity tag reagent." [PSI:PI]
is_a: MS:1002602 ! quantification reagent

[Term]
id: MS:1002604
name: ICAT heavy reagent
def: "The name of the sample labelled with the heavy ICAT label." [PSI:PI]
is_a: MS:1002603 ! ICAT reagent

[Term]
id: MS:1002605
name: ICAT light reagent
def: "The name of the sample labelled with the light ICAT label." [PSI:PI]
is_a: MS:1002603 ! ICAT reagent

[Term]
id: MS:1002606
name: ICPL reagent
def: "Isotope coded protein labeling reagent." [PSI:PI]
is_a: MS:1002602 ! quantification reagent

[Term]
id: MS:1002607
name: ICPL reagent 0
def: "The name of the sample labelled with the ICPL reagent 0." [PSI:PI]
is_a: MS:1002606 ! ICPL reagent

[Term]
id: MS:1002608
name: ICPL reagent 4
def: "The name of the sample labelled with the ICPL reagent 4." [PSI:PI]
is_a: MS:1002606 ! ICPL reagent

[Term]
id: MS:1002609
name: ICPL reagent 6
def: "The name of the sample labelled with the ICPL reagent 6." [PSI:PI]
is_a: MS:1002606 ! ICPL reagent

[Term]
id: MS:1002610
name: ICPL reagent 10
def: "The name of the sample labelled with the ICPL reagent 10." [PSI:PI]
is_a: MS:1002606 ! ICPL reagent

[Term]
id: MS:1002611
name: SILAC reagent
def: "Stable isotope labeling with amino acids in cell culture reagent." 
[PSI:PI]
is_a: MS:1002602 ! quantification reagent

[Term]
id: MS:1002612
name: SILAC heavy reagent
def: "The name of the sample labelled with the heavy SILAC label." [PSI:PI]
is_a: MS:1002611 ! SILAC reagent

[Term]
id: MS:1002613
name: SILAC medium reagent
def: "The name of the sample labelled with the medium SILAC label." [PSI:PI]
is_a: MS:1002611 ! SILAC reagent

[Term]
id: MS:1002614
name: SILAC light reagent
def: "The name of the sample labelled with the light SILAC label." [PSI:PI]
is_a: MS:1002611 ! SILAC reagent

[Term]
id: MS:1002615
name: TMT reagent
def: "Tandem mass tag reagent." [PSI:PI]
is_a: MS:1002602 ! quantification reagent

[Term]
id: MS:1002616
name: TMT reagent 126
def: "The name of the sample labelled with the TMT reagent 126." [PSI:PI]
is_a: MS:1002615 ! TMT reagent

[Term]
id: MS:1002617
name: TMT reagent 127
def: "The name of the sample labelled with the TMT reagent 127." [PSI:PI]
is_a: MS:1002615 ! TMT reagent

[Term]
id: MS:1002618
name: TMT reagent 128
def: "The name of the sample labelled with the TMT reagent 128." [PSI:PI]
is_a: MS:1002615 ! TMT reagent

[Term]
id: MS:1002619
name: TMT reagent 129
def: "The name of the sample labelled with the TMT reagent 129." [PSI:PI]
is_a: MS:1002615 ! TMT reagent

[Term]
id: MS:1002620
name: TMT reagent 130
def: "The name of the sample labelled with the TMT reagent 130." [PSI:PI]
is_a: MS:1002615 ! TMT reagent

[Term]
id: MS:1002621
name: TMT reagent 131
def: "The name of the sample labelled with the TMT reagent 131." [PSI:PI]
is_a: MS:1002615 ! TMT reagent

[Term]
id: MS:1002622
name: iTRAQ reagent
def: "Isobaric tag for relative and absolute quantitation reagent." [PSI:PI]
is_a: MS:1002602 ! quantification reagent

[Term]
id: MS:1002623
name: iTRAQ reagent 113
def: "The name of the sample labelled with the iTRAQ reagent 113." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent

[Term]
id: MS:1002624
name: iTRAQ reagent 114
def: "The name of the sample labelled with the iTRAQ reagent 114." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent

[Term]
id: MS:1002625
name: iTRAQ reagent 115
def: "The name of the sample labelled with the iTRAQ reagent 115." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent

[Term]
id: MS:1002626
name: iTRAQ reagent 116
def: "The name of the sample labelled with the iTRAQ reagent 116." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent

[Term]
id: MS:1002627
name: iTRAQ reagent 117
def: "The name of the sample labelled with the iTRAQ reagent 117." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent

[Term]
id: MS:1002628
name: iTRAQ reagent 118
def: "The name of the sample labelled with the iTRAQ reagent 118." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent

[Term]
id: MS:1002629
name: iTRAQ reagent 119
def: "The name of the sample labelled with the iTRAQ reagent 119." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent

[Term]
id: MS:1002630
name: iTRAQ reagent 121
def: "The name of the sample labelled with the iTRAQ reagent 121." [PSI:PI]
is_a: MS:1002622 ! iTRAQ reagent


Changed CV terms in version 3.83.0 of psi-ms.obo:
=================================================
************ Renamed MS:1001984 from 'Ascore' to 'Ascore software' to 
avoid name clash with term
************ id: MS:1001985 (name: Ascore)
[Term]
id: MS:1001984
name: Ascore software
def: "Ascore software." [PSI:MS]
is_a: MS:1001456 ! analysis software


Best Regards,
Gerhard

-- 

*--*

*Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER*

*PhD student*

*Medizinisches Proteom-Center*

*DEPARTMENT Medical Bioinformatics*

*Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum

*Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554

*E-mail***ger...@ru... <mailto:ger...@ru...>

www.medizinisches-proteom-center.de 
<http://www.medizinisches-proteom-center.de/>