From: mayerg97 <ger...@ru...> - 2015-10-12 14:17:16
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Dear proteomics community, sorry for any inconveniencies about the last (3.79.0) psi-ms.obo update. I updated it now for the last time at both the old SourceForge and the new GitHub location. In future I will only update the new location at GitHub. So change your links in case you parse in the ps-ms.obo file by your programs. The new link is https://github.com/HUPO-PSI/mzML/blob/master/cv/psi-ms.obo I also updated the links pointing tp psi-ms.obo at BioPortal and requested the OBOFoundry link update. In addition I updated the mzIdentML validator to version 1.4.14 (new Apache xerces library, so it runs now also under Java 8). The link to the mzIdentML validator is: https://github.com/HUPO-PSI/mzIdentML/blob/master/validator/trunk/mzIdentMLValidator/mzIdentMLValidator_GUI_v1.4.14-SNAPSHOT.zip Best Regards, Gerhard Am 09.10.2015 um 20:13 schrieb Eric Deutsch: > > Thanks for pointing this out, Matt. > > So I’m unsure of what the situation here is. There is a movement in > progress to move everything to GitHub and this may already have been > completed. I am unsure of where this new version went. Did it go into > SourceForge CVS? Did it go into GitHub? What is our plan going forward > here? It would be nice to be a little more explicit and noisy about > that is happening. I have automated processes here at ISB that pull > the latest CVs from various version controls automatically and I need > to update these, but I’m wondering when to do this. I think nearly all > PSI related materials are being or have moved to GitHub. > > So I expect there will be some forthcoming announcements very soon > that will describe what has moved and what has not and what version > control processes need to be changed. > > Thanks, > > Eric > > *From:*Chambers, Matthew [mailto:mat...@gm... > <mailto:mat...@gm...>] > *Sent:* Friday, October 09, 2015 10:31 AM > *To:* psi...@li... > <mailto:psi...@li...> > *Subject:* Re: [Psidev-pi-dev] New version 3.79.0 of psi-ms.obo > > Thanks Gerhard. Can you commit the update to CVS as well? > > Thanks, > -Matt > > On 10/7/2015 3:31 AM, mayerg97 wrote: > > Dear proteomics community, > > attached you find the new version 3.79 of the psi-ms.obo file. > > > Changed CV terms in version 3.79 of psi-ms.obo: > =============================================== > ************ Replaced all "AB Sciex" terms by "SCIEX" > > ************ Renamed TOF/TOF 5800 --> 5800 TOF/TOF > [Term] > id: MS:1001482 > name: 5800 TOF/TOF > def: "SCIEX 5800 TOF-TOF Analyzer." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > > > New CV terms in version 3.79.0 of psi-ms.obo: > ============================================= > ************ New terms for Andromeda result file > [Term] > id: MS:1002576 > name: Andromeda result file > def: "Andromeda result file output format." [PSI:PI] > is_a: MS:1001040 ! intermediate analysis format > > ************ New terms for Sciex instruments > [Term] > id: MS:1002577 > name: 2000 QTRAP > def: "SCIEX 2000 QTRAP." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002578 > name: 2500 QTRAP > def: "SCIEX 2500 QTRAP." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002579 > name: 3500 QTRAP > def: "SCIEX 3500 QTRAP." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002580 > name: QTRAP 4500 > def: "SCIEX QTRAP 4500." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002581 > name: QTRAP 6500 > def: "SCIEX QTRAP 6500." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002582 > name: QTRAP 6500+ > def: "SCIEX QTRAP 6500+." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002583 > name: TripleTOF 4600 > def: "SCIEX TripleTOF 4600 time-of-flight mass spectrometer." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002584 > name: TripleTOF 5600+ > def: "SCIEX TripleTOF 5600+ time-of-flight mass spectrometer." > [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002585 > name: API 100 > def: "Applied Biosystems/MDS SCIEX API 100 MS." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002586 > name: API 100LC > def: "Applied Biosystems/MDS SCIEX API 100LC MS." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002587 > name: API 165 > def: "Applied Biosystems/MDS SCIEX API 165 MS." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002588 > name: API 300 > def: "Applied Biosystems/MDS SCIEX API 300 MS." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002589 > name: API 350 > def: "Applied Biosystems/MDS SCIEX API 350 MS." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002590 > name: API 365 > def: "Applied Biosystems/MDS SCIEX API 365 MS." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002591 > name: Triple Quad 3500 > def: "SCIEX Triple Quad 3500." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002592 > name: Triple Quad 4500 > def: "SCIEX Triple Quad 4500." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002593 > name: Triple Quad 5500 > def: "SCIEX Triple Quad 5500." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002594 > name: Triple Quad 6500 > def: "SCIEX Triple Quad 6500." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > [Term] > id: MS:1002595 > name: Triple Quad 6500+ > def: "SCIEX Triple Quad 6500+." [PSI:MS] > is_a: MS:1000121 ! SCIEX instrument model > > Best Regards, > Gerhard > > -- > > *--* > > *Dipl. Inform. med., Dipl. Wirtsch. Inf. GERHARD MAYER* > > *PhD student* > > *Medizinisches Proteom-Center* > > *DEPARTMENT Medical Bioinformatics* > > *Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum > > *Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554 > > *E-mail *ger...@ru... <mailto:ger...@ru...> > > www.medizinisches-proteom-center.de > <http://www.medizinisches-proteom-center.de> > > > > ------------------------------------------------------------------------------ > > > _______________________________________________ > Psidev-pi-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-pi-dev -- *--* *Dipl. Inform. med., Dipl. Wirtsch. **Inf. GERHARD MAYER* *PhD student* *Medizinisches Proteom-Center* *DEPARTMENT Medical Bioinformatics* *Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum *Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554 *E-mail***ger...@ru... <mailto:ger...@ru...> www.medizinisches-proteom-center.de <http://www.medizinisches-proteom-center.de/> |