Re: [Psidev-pi-dev] New version 3.79.0 of psi-ms.obo

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Good to know, Eric. I too have scripts that need to be updated when the 
new location is known. :)

On 10/9/2015 1:13 PM, Eric Deutsch wrote:
>
> Thanks for pointing this out, Matt.
>
> So I’m unsure of what the situation here is. There is a movement in 
> progress to move everything to GitHub and this may already have been 
> completed. I am unsure of where this new version went. Did it go into 
> SourceForge CVS? Did it go into GitHub? What is our plan going forward 
> here? It would be nice to be a little more explicit and noisy about 
> that is happening. I have automated processes here at ISB that pull 
> the latest CVs from various version controls automatically and I need 
> to update these, but I’m wondering when to do this. I think nearly all 
> PSI related materials are being or have moved to GitHub.
>
> So I expect there will be some forthcoming announcements very soon 
> that will describe what has moved and what has not and what version 
> control processes need to be changed.
>
> Thanks,
>
> Eric
>
> *From:*Chambers, Matthew [mailto:mat...@gm... 
> <mailto:mat...@gm...>]
> *Sent:* Friday, October 09, 2015 10:31 AM
> *To:* psi...@li... 
> <mailto:psi...@li...>
> *Subject:* Re: [Psidev-pi-dev] New version 3.79.0 of psi-ms.obo
>
> Thanks Gerhard. Can you commit the update to CVS as well?
>
> Thanks,
> -Matt
>
> On 10/7/2015 3:31 AM, mayerg97 wrote:
>
>     Dear proteomics community,
>
>     attached you find the new version 3.79 of the psi-ms.obo file.
>
>
>     Changed CV terms in version 3.79 of psi-ms.obo:
>     ===============================================
>     ************ Replaced all "AB Sciex" terms by "SCIEX"
>
>     ************ Renamed TOF/TOF 5800 --> 5800 TOF/TOF
>     [Term]
>     id: MS:1001482
>     name: 5800 TOF/TOF
>     def: "SCIEX 5800 TOF-TOF Analyzer." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>
>
>     New CV terms in version 3.79.0 of psi-ms.obo:
>     =============================================
>     ************ New terms for Andromeda result file
>     [Term]
>     id: MS:1002576
>     name: Andromeda result file
>     def: "Andromeda result file output format." [PSI:PI]
>     is_a: MS:1001040 ! intermediate analysis format
>
>     ************ New terms for Sciex instruments
>     [Term]
>     id: MS:1002577
>     name: 2000 QTRAP
>     def: "SCIEX 2000 QTRAP." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002578
>     name: 2500 QTRAP
>     def: "SCIEX 2500 QTRAP." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002579
>     name: 3500 QTRAP
>     def: "SCIEX 3500 QTRAP." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002580
>     name: QTRAP 4500
>     def: "SCIEX QTRAP 4500." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002581
>     name: QTRAP 6500
>     def: "SCIEX QTRAP 6500." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002582
>     name: QTRAP 6500+
>     def: "SCIEX QTRAP 6500+." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002583
>     name: TripleTOF 4600
>     def: "SCIEX TripleTOF 4600 time-of-flight mass spectrometer." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002584
>     name: TripleTOF 5600+
>     def: "SCIEX TripleTOF 5600+ time-of-flight mass spectrometer."
>     [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002585
>     name: API 100
>     def: "Applied Biosystems/MDS SCIEX API 100 MS." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002586
>     name: API 100LC
>     def: "Applied Biosystems/MDS SCIEX API 100LC MS." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002587
>     name: API 165
>     def: "Applied Biosystems/MDS SCIEX API 165 MS." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002588
>     name: API 300
>     def: "Applied Biosystems/MDS SCIEX API 300 MS." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002589
>     name: API 350
>     def: "Applied Biosystems/MDS SCIEX API 350 MS." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002590
>     name: API 365
>     def: "Applied Biosystems/MDS SCIEX API 365 MS." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002591
>     name: Triple Quad 3500
>     def: "SCIEX Triple Quad 3500." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002592
>     name: Triple Quad 4500
>     def: "SCIEX Triple Quad 4500." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002593
>     name: Triple Quad 5500
>     def: "SCIEX Triple Quad 5500." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002594
>     name: Triple Quad 6500
>     def: "SCIEX Triple Quad 6500." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     [Term]
>     id: MS:1002595
>     name: Triple Quad 6500+
>     def: "SCIEX Triple Quad 6500+." [PSI:MS]
>     is_a: MS:1000121 ! SCIEX instrument model
>
>     Best Regards,
>     Gerhard
>
>     -- 
>
>     *--*
>
>     *Dipl. Inform. med., Dipl. Wirtsch. Inf. GERHARD MAYER*
>
>     *PhD student*
>
>     *Medizinisches Proteom-Center*
>
>     *DEPARTMENT Medical Bioinformatics*
>
>     *Building *ZKF E.049a | Universitätsstraße 150 | D-44801 Bochum
>
>     *Fon *+49 (0)234 32-21006 | *Fax *+49 (0)234 32-14554
>
>     *E-mail *ger...@ru... <mailto:ger...@ru...>
>
>     www.medizinisches-proteom-center.de
>     <http://www.medizinisches-proteom-center.de>
>