[Psidev-ms-dev] New version 3.76.0 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached you find the new version 3.76.0 of the psi-ms.obo file.


Changed CV terms in version 3.76.0 of psi-ms.obo:
=================================================
************ Added is_a: MS:1002484 ! peptide-level statistical threshold
************ Updated definition
[Term]
id: MS:1001868
name: distinct peptide-level q-value
def: "Estimation of the q-value for distinct peptides once redundant 
identifications of the same peptide have been removed (id est multiple 
PSMs, possibly with different mass modifications, mapping to the same 
sequence have been collapsed to one entry)." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002484 ! peptide-level statistical threshold
relationship: has_units UO:0000166 ! parts per notation unit
relationship: has_units UO:0000187 ! percent
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive

************ Obsoleted the following term because of id clash with 
MS:1002289 (ProteinProphet)
[Term]
id: MS:1002289
name: ASAPRatio
def: "OBSOLETE A program in the TPP that calculates PSM, peptide, and 
protein-level abundances based on 2-channel isotope-labelled data such 
as ICAT, SILAC, etc." [PSI:PI]
comment: This term was made obsolete because of id clash with the term 
MS:1002289 (ProteinProphet) - use term MS:1002574 (ASAPRatio) instead.
is_a: MS:1002286 ! Trans-Proteomic Pipeline software
is_obsolete: true


New CV terms in version 3.76.0 of psi-ms.obo:
=============================================
************ Term with new id for ASAPRatio
[Term]
id: MS:1002574
name: ASAPRatio
def: "A program in the TPP that calculates PSM, peptide, and 
protein-level abundances based on 2-channel isotope-labelled data such 
as ICAT, SILAC, etc." [PSI:PI]
is_a: MS:1002286 ! Trans-Proteomic Pipeline software

Best Regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
Bioinformatics / Biostatistics
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I), E.049a
Universitätsstraße 150
D-44801 Bochum
  
Phone:	+49(0)234/32-21006
Fax:	+49(0)234/32-14554
Email:	ger...@ru...
Web:	http://www.medizinisches-proteom-center.de