[Psidev-ms-dev] Release candidate 3.76.0_rc1 of psi-ms.obo

[mayerg97 <ger...@ru...>]

Dear proteomics community,

attached you find the release candidate 3.76.0_rc1 of the psi-ms.obo file.


Changed CV terms in version 3.76.0_rc1 of psi-ms.obo:
=====================================================
************ Added is_a: MS:1002484 ! peptide-level statistical threshold
[Term]
id: MS:1001868
name: distinct peptide-level q-value
def: "Estimation of the q-value for distinct peptides once redundant 
identifications of the same peptide have been removed (id est multiple 
PSMs have been collapsed to one entry)." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1002484 ! peptide-level statistical threshold
relationship: has_units UO:0000166 ! parts per notation unit
relationship: has_units UO:0000187 ! percent
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive

************ Obsoleted the following term because of id clash with 
MS:1002289 (ProteinProphet)
[Term]
id: MS:1002289
name: ASAPRatio
def: "OBSOLETE A program in the TPP that calculates PSM, peptide, and 
protein-level abundances based on 2-channel isotope-labelled data such 
as ICAT, SILAC, etc." [PSI:PI]
comment: This term was made obsolete because of id clash with the term 
MS:1002289 (ProteinProphet) - use term MS:1002574 (ASAPRatio) instead.
is_a: MS:1002286 ! Trans-Proteomic Pipeline software
is_obsolete: true



New CV terms in version 3.76.0_rc1 of psi-ms.obo:
=================================================
************ Term with new id for ASAPRatio
[Term]
id: MS:1002574
name: ASAPRatio
def: "A program in the TPP that calculates PSM, peptide, and 
protein-level abundances based on 2-channel isotope-labelled data such 
as ICAT, SILAC, etc." [PSI:PI]
is_a: MS:1002286 ! Trans-Proteomic Pipeline software

Best Regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
Bioinformatics / Biostatistics
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I), E.049a
Universitätsstraße 150
D-44801 Bochum
  
Phone:	+49(0)234/32-21006
Fax:	+49(0)234/32-14554
Email:	ger...@ru...
Web:	http://www.medizinisches-proteom-center.de