[Psidev-ms-cvs] CVS update: psi/psi-ms/mzML/controlledVocabulary

[Gerhard M. <ger...@us...>]

Date:	Wednesday May 21, 2014 @ 6:38
Author:	gerhard64mayer


http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary

Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv12209

Modified Files:
	lastID.txt psi-ms.obo 
Added Files:
	2013_Schober_Mayer_etal_ODLS2013_Ontological analysis of controlled vocabularies used in PSIMSI supported XML standards.pdf 
	MS_Abbreviations.txt 
Log Message:
New version 3.64.0 of psi-ms.obo:
=====================
- New terms for mzTab, for specifying the neutral losses, for collision-induced dissociation,
for ion mobility MS, for PeptideShaker and for ProteoAnnotator.
- The neutral losses are now defined as terms independently from the ions in
order to decouple the two concepts ion and neutral loss from each other.
- The old neutral loss terms have now the suffix " DEPRECATED" in their name,
but are not obsoleted. The new parent term "ion series considered in search" (MS:1002473) now
contains all the ions and neutral loss terms.
- some terms from the purgatory branch are now obsolete.
- corrected some spelling errors in definitions.