Re: [Psidev-ms-dev] PSI MS call Tuesday: compression

[Eric D. <Eri...@sy...>]

Hi Mathias, I do not have this information at hand. We certainly would need
to come up with this soon. The code and what documentation there is so far
is at:

https://github.com/fickludd/ms-numpress

Maybe Johan has some additional documentation?

Thanks,
Eric


> -----Original Message-----
> From: Mathias Walzer [mailto:wa...@in...]
> Sent: Tuesday, October 22, 2013 8:35 AM
> To: Mass spectrometry standard development
> Subject: Re: [Psidev-ms-dev] PSI MS call Tuesday: compression
>
> Hi Eric,
>
> we, the openMS guys (foremost those working with swath files) are eager
> to make use of such a neat compression. To assist in making the right
> calls when plugging in the lib(s) to our mzML infrastructure in OpenMS
> I was hoping to get some insights during the call. Does one of these
> doc's you were talking about contain where numpress hooks into the mzML
> schema? What modes are envisaged, at which point the cv terms are
> supposed to come into play ans so on.
> If so, can you send me the respective files?
> No OpenMS developer is actively working on mzML right now on a regular
> basis. So integration time into OpenMS will take some time. It would be
> great to have a head start, before you get this finalized.
>
> Cheers,
> Viele Grüße,
> --
> Mathias Walzer
>
> University of Tuebingen
> Wilhelm Schickard Institute for Computer Science
> Division for Applied Bioinformatics
> Room C313, Sand 14, D-72076 Tuebingen
>
> phone:  +49 (0)7071-29 70437 and +49 (0)7071-29 87649
> fax:  +49 (0)7071-29 5152
>
> Diese Nachricht ist 100% biologisch abbaubar!
>
>
>
>
>
> ----- Original Message -----
> From: "Eric Deutsch" <Eri...@sy...>
> To: "Mass spectrometry standard development" <psidev-ms-
> de...@li...>, psi...@li...
> Cc: "Eric Deutsch" <ede...@sy...>
> Sent: Tuesday, 22 October, 2013 5:04:59 AM
> Subject: Re: [Psidev-ms-dev] PSI MS call Tuesday: compression
>
>
>
>
>
> Hi everyone, just a reminder that we will have a PSI MS/PI WG
> teleconference to discuss mzML data compression and related topics in
> 12 hr.
>
>
>
> 08:00 San Francisco
>
> 11:00 New York
>
> 16:00 London
>
> 17:00 Geneva
>
>
>
> + Germany: 08001012079
>
> + Switzerland: 0800000860
>
> + UK: 08081095644
>
> + USA: 1-866-832-8490
>
>
>
> Generic international: +44 2083222500 (UK number)
>
>
>
> access code: 297427 #
>
>
>
>
>
>
>
>
>
>
> From: Eric Deutsch [mailto: ede...@sy... ]
> Sent: Friday, October 18, 2013 3:39 PM
> To: Mass spectrometry standard development; psidev-pi-
> de...@li...
> Cc: Eric Deutsch
> Subject: PSI MS call Tuesday: compression
>
>
>
> Hi everyone, let’s have a PSI MS/PI WG teleconference call Tuesday at
> the usual time.
>
>
>
> We will have a discussion about the ongoing numpress work to
> dramatically improve the compression options for mzML.
>
> 08:00 San Francisco
>
> 11:00 New York
>
> 16:00 London
>
> 17:00 Geneva
>
> + Germany: 08001012079
>
> + Switzerland: 0800000860
>
> + UK: 08081095644
>
> + USA: 1-866-832-8490
>
> Generic international: +44 2083222500 (UK number)
>
> access code: 297427 #
>
>
>
>
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