[Psidev-ms-dev] Release candidate 3.36.0_rc1 of psi-ms.obo

[Gerhard M. <Ger...@ru...>]

Dear proteomics community,

attached there's the release candidate 3.36.0_rc1 of the psi-ms.obo file.

Following a proposal of Eric from May 24th last year, it contains a 
restructuring
of the tree for the search engine input parameters, which has a little 
bit more structure now:
- search engine input parameter
   - common search engine input parameter
     - ... (terms shared by more than one search engine)
   - engine specific search engine input parameter
     - Mascot input parameter
       - ...
     - Sequest input parameter
       - ...
     - ...


Changed CV terms in version 3.36.0_rc1 of psi-ms.obo:
=====================================================
************ made obsolete
[Term]
id: MS:1001302
name: search engine specific input parameter
def: "OBSOLETE This branch contains search engine specific input 
parameters (e.g. Mascot Sig Threshold)." [PSI:PI]
is_a: MS:1001249 ! search input details
comment: This term was made obsolete because it was replaced by search 
engine input parameter (MS:1002093) and child terms thereof.
is_obsolete: true

In addition all is_a references to this term are replaced by references 
to the newly introduced terms.


New CV terms in version 3.36.0_rc1 of psi-ms.obo:
=================================================
[Term]
id: MS:1002093
name: search engine input parameter
def: "This branch contains search engine input parameters." [PSI:PI]
is_a: MS:1001249 ! search input details

[Term]
id: MS:1002094
name: common search engine input parameter
def: "This branch contains search engine input parameters that are 
shared by more than one search engine." [PSI:PI]
is_a: MS:1002093 ! search engine input parameter

[Term]
id: MS:1002095
name: engine specific search engine input parameter
def: "This branch contains search engine input parameters that are 
specific to a search engine." [PSI:PI]
is_a: MS:1002093 ! search engine input parameter

[Term]
id: MS:1002096
name: Mascot input parameter
def: "Search engine input parameters specific to Mascot." [PSI:PI, 
source:http://www.matrixscience.com/help/search_field_help.html]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002097
name: Sequest input parameter
def: "Search engine input parameters specific to Sequest." [PSI:PI, 
source:http://fields.scripps.edu/sequest/parameters.html]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002098
name: Phenyx input parameter
def: "Search engine input parameters specific to Phenyx." [PSI:PI]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002099
name: ProteinExtractor input parameter
def: "Search engine input parameters specific to ProteinExtractor." [PSI:PI]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002100
name: OMSSA input parameter
def: "Search engine input parameters specific to OMSSA." [PSI:PI]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002101
name: Scaffold input parameter
def: "Search engine input parameters specific to Scaffold." [PSI:PI]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002102
name: Percolator input parameter
def: "Search engine input parameters specific to Percolator." [PSI:PI]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002103
name: ProteinScape input parameter
def: "Search engine input parameters specific to ProteinScape." [PSI:PI]
is_a: MS:1002095 ! engine specific search engine input parameter

[Term]
id: MS:1002104
name: ProteomeDiscoverer input parameter
def: "Search engine input parameters specific to ProteomeDiscoverer." 
[PSI:PI]
is_a: MS:1002095 ! engine specific search engine input parameter


Best Regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
BioInformatik
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I)
E.042
Universitätsstrasse 150
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Phone:	+49(0)234/32-29836
Fax:	+49(0)234/32-14554
Email:	Ger...@ru...
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