[Psidev-ms-dev] Release candidate 3.29.0_rc2 of psi-ms.obo

[Gerhard M. <Ger...@ru...>]

Dear proteomics community,

attached there's the new version 3.29.0_rc2 of the psi-ms.obo.
It contains two changes proposed by Salvador and a corrected is_a 
relation for the 'unlabeled sample' term
as well as some new terms for the ProteinProspector software.

Changed CV terms in version 3.29.0_rc2 of psi-ms.obo:
=====================================================
************ renamed from confident peptide --> confident peptide 
sequence number
[Term]
id: MS:1001100
name: confident peptide sequence number
def: "This counts the number of peptide sequences without regard to 
whether they are distinct. Multiple charges states and multiple 
modification states DO count as multiple peptides. The definition of 
'confident' must be qualified elsewhere." [PSI:PI]
xref: value-type:xsd\:nonNegativeInteger "The allowed value-type for 
this CV term."
is_a: MS:1001116 ! single protein result details

************ added the relation is_a: MS:1001153 ! search engine 
specific score
[Term]
id: MS:1001579
name: Scaffold:Protein Probability
def: "Scaffold protein probability score." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001116 ! single protein result details
is_a: MS:1001153 ! search engine specific score

************ changed the relation is_a: MS:1002018 ! MS1 label-based 
analysis --> is_a: MS:1000548 ! sample attribute
[Term]
id: MS:1002038
name: unlabeled sample
def: "A sample that has not been labelled or modified. This is often 
referred to as \"light\" to distinguish from \"heavy\"." [PSI:PI]
synonym: "light labeled sample" EXACT []
is_a: MS:1000548 ! sample attribute


New CV terms in version 3.29.0_rc2 of psi-ms.obo:
=================================================
[Term]
id: MS:1002043
name: ProteinProspector
def: "ProteinProspector software for data acquisition and analysis." 
[PSI:PI]
is_a: MS:1001456 ! analysis software

[Term]
id: MS:1002044
name: ProteinProspector:score
def: "The ProteinProspector result 'Score'." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1002045
name: ProteinProspector:expectation value
def: "The ProteinProspector result 'Expectation value'." [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1002046
name: native source path
def: "The original source path used for directory-based sources." [PSI:MS]
xref: value-type:xsd\:string "The allowed value-type for this CV term."

Best Regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
BioInformatik
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I)
E.042
Universitätsstrasse 150
D-44801 Bochum
  
Phone:	+49(0)234/32-29836
Fax:	+49(0)234/32-14554
Email:	Ger...@ru...
Web:	http://www.medizinisches-proteom-center.de