[Psidev-ms-dev] Release candidate psi-ms.obo v.3.26.0_rc1

[Gerhard M. <Ger...@ru...>]

Dear proteomics community,

attached there's the release candidate 3.26.0_rc1 of the psi-ms.obo.

It contains terms used for mzQuantML validation.
We can discuss them during our mzQuantML teleconference today.

Comments and further proposals are as always welcome.


We have already defined the following terms for use in AnalysisSummary 
of mzQuantML:
====================================================================================
MS:1001833 quantitation analysis summary
MS:1001834 LC-MS label-free quantitation analysis
MS:1001835 SILAC quantitation analysis
MS:1001836 spectral counting quantitation analysis
MS:1001837 iTRAQ quantitation analysis
MS:1001838 SRM quantitation analysis
MS:1001839 metabolic labeling 14N / 15N quantitation analysis
MS:1002001 MS1 Label-based raw feature quantitation
MS:1002002 MS1 Label-based peptide level quantitation
MS:1002003 MS1 Label-based protein level quantitation
MS:1002004 MS1 Label-based proteinGroup level quantitation
MS:1002009 isobaric label quantification analysis
MS:1002010 TMT quantification analysis


Newly added CV terms in version 3.26.0_rc1 of psi-ms.obo:
==========================================================
[Term]
id: MS:1002015
name: spectral count peptide level quantitation
def: "Spectral count peptide level quantitation." [PSI:PI]
is_a: MS:1001836 ! spectral counting quantitation analysis

[Term]
id: MS:1002016
name: spectral count protein level quantitation
def: "Spectral count protein level quantitation." [PSI:PI]
is_a: MS:1001836 ! spectral counting quantitation analysis

[Term]
id: MS:1002017
name: spectral count proteingroup level quantitation
def: "Spectral count proteingroup level quantitation." [PSI:PI]
is_a: MS:1001836 ! spectral counting quantitation analysis

[Term]
id: MS:1002018
name: MS1 label-based analysis
def: "MS1 label-based analysis." [PSI:PI]
is_a: MS:1001833 ! quantitation analysis summary

[Term]
id: MS:1002019
name: label-free raw feature quantitation
def: "Label-free raw feature quantitation." [PSI:PI]
is_a: MS:1001834 ! LC-MS label-free quantitation analysis

[Term]
id: MS:1002020
name: label-free peptide level quantitation
def: "Label-free peptide level quantitation." [PSI:PI]
is_a: MS:1001834 ! LC-MS label-free quantitation analysis

[Term]
id: MS:1002021
name: label-free protein level quantitation
def: "Label-free protein level quantitation." [PSI:PI]
is_a: MS:1001834 ! LC-MS label-free quantitation analysis

[Term]
id: MS:1002022
name: label-free proteingroup level quantitation
def: "Label-free proteingroup level quantitation." [PSI:PI]
is_a: MS:1001834 ! LC-MS label-free quantitation analysis

[Term]
id: MS:1002023
name: MS2 tag-based analysis
def: "MS2 tag-based analysis." [PSI:PI]
is_a: MS:1001833 ! quantitation analysis summary

[Term]
id: MS:1002024
name: MS2 tag-based feature level quantitation
def: "MS2 tag-based feature level quantitation." [PSI:PI]
is_a: MS:1002023 ! MS2 tag-based analysis

[Term]
id: MS:1002025
name: MS2 tag-based peptide level quantitation
def: "MS2 tag-based peptide level quantitation." [PSI:PI]
is_a: MS:1002023 ! MS2 tag-based analysis

[Term]
id: MS:1002026
name: MS2 tag-based protein level quantitation
def: "MS2 tag-based protein level quantitation." [PSI:PI]
is_a: MS:1002023 ! MS2 tag-based analysis

[Term]
id: MS:1002027
name: MS2 tag-based proteingroup level quantitation
def: "MS2 tag-based proteingroup level quantitation." [PSI:PI]
is_a: MS:1002023 ! MS2 tag-based analysis


Changed CV terms in version 3.26.0_rc1 of psi-ms.obo:
=====================================================
************ The following terms changed the case from MS1 Label-based 
... to MS1 label-based ... and
************ have the is_a: MS:1002018 ! MS1 label-based analysis relation
[Term]
id: MS:1002001
name: MS1 label-based raw feature quantitation
def: "MS1 label-based raw feature quantitation." [PSI:PI]
is_a: MS:1002018 ! MS1 label-based analysis

[Term]
id: MS:1002002
name: MS1 label-based peptide level quantitation
def: "MS1 label-based peptide level quantitation." [PSI:PI]
is_a: MS:1002018 ! MS1 label-based analysis

[Term]
id: MS:1002003
name: MS1 label-based protein level quantitation
def: "MS1 label-based protein level quantitation." [PSI:PI]
is_a: MS:1002018 ! MS1 label-based analysis

[Term]
id: MS:1002004
name: MS1 label-based proteingroup level quantitation
def: "MS1 label-based proteingroup level quantitation." [PSI:PI]
is_a: MS:1002018 ! MS1 label-based analysis


Best Regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
BioInformatik
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I)
E.042
Universitätsstrasse 150
D-44801 Bochum

Phone:	+49(0)234/32-29836
Fax:	+49(0)234/32-14554
Email:	Ger...@ru...
Web:	http://www.medizinisches-proteom-center.de