[Psidev-ms-dev] Release canditate psi-ms.obo v.3.23.0_rc1

[Gerhard M. <Ger...@ru...>]

Dear proteomics community,

attached there's the the release candidate 3.23.0_rc1 for the psi-ms.obo.
It contains the newly proposed terms concerning mzQuantML validation 
from the San Diego meeting.

Should we use the boolean data type or suffices it to enumerate just the 
values?
Do we need some other terms?

Comments and further proposals are as always welcome.
If there are no objections it's planned to release the next official 
version of the psi-ms.obo friday next week,
so that we can discuss on the terms on the next mzQuantML call on 
thursday (April 19th).


We have already the following terms for mzQuantML validation:
-------------------------------------------------------------
MS:1001833    quantitation analysis summary

MS:1001834    LC-MS label-free quantitation analysis
MS:1001835    SILAC quantitation analysis
MS:1001836    spectral counting quantitation analysis
MS:1001837    iTraq quantitation analysis
MS:1001838    SRM quantitation analysis
MS:1001839    metabolic labeling 14N / 15N quantitation analysis


Newly added CV terms in version 3.23.0_rc1 of psi-ms.obo:
=========================================================
[Term]
id: MS:1002001
name: MS1 Label-based raw feature quantitation
def: "MS1 Label-based raw feature quantitation (FeatureQuantLayer MUST 
be present)." [PSI:PI]
xref: value-type:xsd\:boolean "The allowed value-type for this CV term."
is_a: MS:1001833 ! quantitation analysis summary

[Term]
id: MS:1002002
name: MS1 Label-based peptide level quantitation
def: "MS1 Label-based peptide level quantitation 
(PeptideConsensusQuantLayer MUST be present)." [PSI:PI]
xref: value-type:xsd\:boolean "The allowed value-type for this CV term."
is_a: MS:1001833 ! quantitation analysis summary

[Term]
id: MS:1002003
name: MS1 Label-based protein level quantitation
def: "MS1 Label-based protein level quantitation (ProteinQuantLayer MUST 
be present)." [PSI:PI]
xref: value-type:xsd\:boolean "The allowed value-type for this CV term."
is_a: MS:1001833 ! quantitation analysis summary

[Term]
id: MS:1002004
name: MS1 Label-based proteinGroup level quantitation
def: "MS1 Label-based proteinGroup level quantitation 
(ProteinGroupQuantLayer MUST be present)." [PSI:PI]
xref: value-type:xsd\:boolean "The allowed value-type for this CV term."
is_a: MS:1001833 ! quantitation analysis summary

Best regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
BioInformatik
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I)
E.042
Universitätsstrasse 150
D-44801 Bochum

Phone:	+49(0)234/32-29836
Fax:	+49(0)234/32-14554
Email:	Ger...@ru...
Web:	http://www.medizinisches-proteom-center.de