[Psidev-ms-dev] psi-ms controlled vocabulary v.3.19.0 released

[Gerhard M. <Ger...@ru...>]

Dear community,

I updated the psi-ms.obo file to the version 3.19.0 in the SourceForge CVS.
It contains the new term 'peptide spectrum match scoring algorithm' 
instead of the 'scoring model'
and a term for the use of C13 peaks in peak detection.

1. Changes to existing CV terms:
================================
************ TODOscoring model is now obsoleted (replaced by peptide 
spectrum match scoring algorithm)
[Term]
id: MS:1001065
name: TODOscoring model
def: "OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model 
(more detailed granularity). TODO: add some child terms!" [PSI:PI]
comment: This term was made obsolete and is replaced by the term 
(MS:1001961).
is_a: MS:1001249 ! search input details
is_obsolete: true
replaced_by: MS:1001961

************ The following terms changed it's name from 
ProteomeDiscoverer:Mascot:Instrument to the more general term 
Mascot:Instrument
[Term]
id: MS:1001656
name: Mascot:Instrument
def: "Type of instrument used to acquire the data in the raw file." [PSI:MS]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
is_a: MS:1001302 ! search engine specific input parameter


2. Newly added CV terms:
========================
[Term]
id: MS:1001961
name: peptide spectrum match scoring algorithm
def: "Algorithm used to score the match between a spectrum and a peptide 
ion." [PSI:MS]
xref: value-type:xsd\:string "The allowed value-type for this CV term."
relationship: part_of MS:1001458 ! spectrum generation information

[Term]
id: MS:1001962
name: Mascot:C13 counts
def: "C13 peaks to use in peak detection." [PSI:MS]
xref: value-type:xsd\:integer "The allowed value-type for this CV term."
is_a: MS:1001302 ! search engine specific input parameter

Best regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
BioInformatik
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I)
E.042
Universitätsstrasse 150
D-44801 Bochum

Phone:	+49(0)234/32-29836
Fax:	+49(0)234/32-14554
Email:	Ger...@ru...
Web:	http://www.medizinisches-proteom-center.de