[Psidev-ms-dev] Changes in psi-ms.obo 3.18.0

[Gerhard M. <Ger...@ru...>]

Dear community,

sorry, I forgot to mention the changes in the new release candidate.



1. Open questions:
==================
The following two terms have an identical name, but different data types.
Maybe it would be a good idea to rename the term MS:1001532 to something 
other, e.g.
"spectrum from database nativeID format string".

Any comments on that?

[Term]
id: MS:1001526
name: spectrum from database nativeID format
def: "databasekey=xsd:Long." [PSI:MS]
comment: A unique identifier of a spectrum stored in a database (e.g. a 
PRIMARY KEY identifier).
is_a: MS:1000767 ! native spectrum identifier format

[Term]
id: MS:1001532
name: spectrum from database nativeID format
def: "databasekey=xsd:string." [PSI:MS]
comment: A unique identifier of a spectrum stored in a database (e.g. a 
PRIMARY KEY identifier).
is_a: MS:1000767 ! native spectrum identifier format
is_a: MS:1001529 ! spectra data details


2. Newly added CV terms:
========================
[Term]
id: MS:1001946
name: PEAKS Studio
def: "PEAKS Studio software for data analysis." [PSI:MS]
is_a: MS:1001139 ! quantitation software name
is_a: MS:1001456 ! analysis software
is_a: MS:1001457 ! data processing software

[Term]
id: MS:1001947
name: PEAKS Online
def: "PEAKS Online software for high throughput data analysis." [PSI:MS]
is_a: MS:1001139 ! quantitation software name
is_a: MS:1001456 ! analysis software
is_a: MS:1001457 ! data processing software

[Term]
id: MS:1001948
def: "PEAKS Node software for high throughput data analysis." [PSI:MS]
is_a: MS:1001139 ! quantitation software name
is_a: MS:1001456 ! analysis software
is_a: MS:1001457 ! data processing software

[Term]
id: MS:1001949
name: BSI software
def: "Bioinformatics Solutions Inc. Software for data processing and 
analysis." [PSI:MS]
is_a: MS:1000531 ! software

[Term]
id: MS:1001950
name: PEAKS:peptideScore
def: "The PEAKS peptide '-10lgP Score'." [PSI:MS]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1001951
name: PEAKS:proteinScore
def: "The PEAKS protein '-10lgP Score'." [PSI:MS]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001116 ! single protein result details
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1001952
name: ZCore:probScore
def: "The ZCore probability score." [PSI:MS]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

Best regards,
Gerhard

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
BioInformatik
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I)
E.042
Universitätsstrasse 150
D-44801 Bochum

Phone:	+49(0)234/32-29836
Fax:	+49(0)234/32-14554
Email:	Ger...@ru...
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