Re: [Psidev-ms-dev] List of new c.v. terms and some changes proposed by the team working in mzQuantML

[Eric D. <Eri...@sy...>]

I believe the SOP states that for an obsoleted term, both the
"is_obsolete: true" should be set and the definition should begin with the
word OBSOLETE (in case some software does not handle "is_obsolete: true"
appropriately, and the definition should also include a sentence on why
the term was obsoleted.

Thanks,
Eric


> -----Original Message-----
> From: David Ovelleiro [mailto:do...@eb...]
> Sent: Thursday, August 18, 2011 6:07 AM
> To: 'psi...@li...'; Mass spectrometry standard
> development
> Subject: Re: [Psidev-ms-dev] List of new c.v. terms and some changes
> proposed by the team working in mzQuantML
>
> Dear all,
>
> After reviewing the new 76 term additions modification, I'm absolutely
> OK with the changes.
> Only a couple of things:
> - the 8 "TODOs" comments inside the new proposal should be removed;
> maybe the TODOs should be done before submitting the new terms, but I
> understand the need of integrating these terms ASAP: the complete
> description of the terms could be added in a next release
> - in addition, the term MS:1001140 should actually be made obsolete
> after removing the OBSOLETE tag in the definition (adding the line
> "is_obsolete: true")
>
> A part from this (quite trivial), everything fine to me. I'm going to
> wait a couple of working days and if nobody has anything to say, I'll
> submit the changes.
>
> Best regards,
> David
>
>
> --
> David Ovelleiro
> Bioinformatician
> PRIDE Group
> Proteomics Services Team, PANDA Group
> EMBL European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton, Cambridge, UK
> CB10 1SD
>
>
>
>
>
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