[Psidev-ms-dev] more is_a vs. part_of errors?

[Brian P. <bri...@in...>]

There are a handful of other cases where it appears that the authors have
gotten "is a" and "part_of" confused.   My proposed corrections (IN CAPS)
inline:

 

MS:1000025 "magnetic field strength"

        part of MS:1000480 "analyzer attribute"

                is a (PART_OF) MS:1000451 "analyzer description"

                        part of MS:1000463 "instrument description"

                                part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000024 "final MS exponent"

        part of MS:1000480 "analyzer attribute"

                is a (PART_OF) MS:1000451 "analyzer description" 

                        part of MS:1000463 "instrument description"

                                part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000022 "TOF Total Path Length"

        part of MS:1000480 "analyzer attribute"

                is a (PART_OF) MS:1000451 "analyzer description"

                        part of MS:1000463 "instrument description"

                                part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000014 "accuracy"

        part of MS:1000480 "analyzer attribute"

                is a (PART_OF) MS:1000451 "analyzer description"

                        part of MS:1000463 "instrument description"

                                part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000106 "on"

        is a MS:1000021 "reflectron state"

                part of MS:1000480 "analyzer attribute"

                        is a (PART_OF) MS:1000451 "analyzer description"

                                part of MS:1000463 "instrument description"

                                        part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000105 "off"

        is a MS:1000021 "reflectron state"

                part of MS:1000480 "analyzer attribute"

                        is a (PART_OF) MS:1000451 "analyzer description"

                                part of MS:1000463 "instrument description"

                                        part of MS:0000000 "MZ controlled
vocabularies"

 

 

 

The following changes would  make the Thermo and ABI stuff look like all the
other vendors:

 

MS:1000495 "Applied Biosystems"

        part of (IS_A) MS:1000121 "ABI / SCIEX"

                is a MS:1000031 "model  by vendor"

                        part of MS:1000463 "instrument description"

                                part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000176 "MAT95XP Trap"

        is a (IS_A) MS:1000493 "Finnigan MAT"

                part of MS:1000483 "Thermo Fisher Scientific"

                        is a MS:1000031 "model  by vendor"

                                part of MS:1000463 "instrument description"

                                        part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000175 "MAT95XP"

        is a MS:1000493 "Finnigan MAT"

                part of (IS_A) MS:1000483 "Thermo Fisher Scientific"

                        is a MS:1000031 "model  by vendor"

                                part of MS:1000463 "instrument description"

                                        part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000174 "MAT900XP Trap"

        is a MS:1000493 "Finnigan MAT"

                part of (IS_A) MS:1000483 "Thermo Fisher Scientific"

                        is a MS:1000031 "model  by vendor"

                                part of MS:1000463 "instrument description"

                                        part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000173 "MAT900XP"

        is a MS:1000493 "Finnigan MAT"

                part of (IS_A) MS:1000483 "Thermo Fisher Scientific"

                        is a MS:1000031 "model  by vendor"

                                part of MS:1000463 "instrument description"

                                        part of MS:0000000 "MZ controlled
vocabularies"

 

MS:1000172 "MAT253"

        is a MS:1000493 "Finnigan MAT"

                part of (IS_A) MS:1000483 "Thermo Fisher Scientific"

                        is a MS:1000031 "model  by vendor"

                                part of MS:1000463 "instrument description"

                                        part of MS:0000000 "MZ controlled
vocabularies"

 

 

I still think there's a schema in there, albeit jammed in slightly sideways
at the moment.

 

- Brian