Re: [Psidev-ms-dev] Retention time in PSI-MS ontology

[Kent L. <knl...@in...>]

Hi Lennart,

There is not currently a term labeled retention time in the MS CV.  The
current terms for the purpose are:

[Term]
id: PSI:1000038
name: Time In Minutes
def: "Acquisition time in minutes." [PSI:GPS]
is_a: PSI:1000460 ! Unit
relationship: part_of PSI:1000459 ! Spectrum Instrument Description

[Term]
id: PSI:1000039
name: Time In Seconds
def: "Acquisition time in seconds." [PSI:GPS]
is_a: PSI:1000460 ! Unit
relationship: part_of PSI:1000459 ! Spectrum Instrument Description

Regards,

Kent

> -----Original Message-----
> From: psi...@li... [mailto:psidev-ms-dev-
> bo...@li...] On Behalf Of Lennart Martens
> Sent: Thursday, November 09, 2006 9:27 AM
> To: psi...@li...
> Subject: [Psidev-ms-dev] Retention time in PSI-MS ontology
> 
> Hi,
> 
> 
> 
> I am processing some mzXML files into mzData for insertion into the
> PRIDE database, and I can't seem to find an ontology term for 'retention
> time' in the PSI-MS ontology.
> 
> If there is one, and I just can't find it for some silly reason, please
> let me know.
> 
> If there isn't any, could this be added? It seems like a sensible thing
> as it is a common enough piece of data.
> 
> 
> Thanks in advance,
> 
> 
> lnnrt.
> 
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