Re: [Psidev-ms-dev] First PSI-MS Teleconference

[Pierre-Alain B. <pie...@is...>]

Hi Chris (and all psidev members)
The MS group has decided to talk about the MCP-MIAPE docs at the next 
phone call.
I had prepared a set of  mapping documents between MIAPE MS, MSI and MCP 
guidelines draft July 14th.
For those interested in commenting on the mapping and on the content, 
it's been decided that I send them the documents and will collect the 
comments.
So if I get emails I send the docs...
Cheers,
Pierre-Alain

Chris Taylor wrote:

> Hi all. I'll try to make this call if I can; regardless though I 
> wonder if a small addition to the agenda might be desirable, namely to 
> mention the 'reponse' (or whatever) to MCP? I'm assuming that as owner 
> of the MIAPE: MSI document, Pierre-Alain will have a hand in this 
> along with Sean and others with an interest? It may be in order to 
> actually draw up a list of drafters who can do the point-by-point 
> offline.
>
> To do my bit I will later today post the MIAPE: MS document as a final 
> version, but with any sniff of informatics removed (i.e. profile to 
> peak list), with a view to putting it into the MSI module, to better 
> align that document with the MCP proposal. MIAPE: MS has been sitting 
> around for some time now though, and so I think it is only fair to the 
> contribtors to that document that they see something come from it.
>
> We should have by early next year MIAPE modules for gels and gel 
> informatics, and should be moving forwards with general separations 
> (everything that is not a 'classical' 1 or 2D gel) and study design. 
> I'd like to see something equivalent for mass spec informatics sooner 
> rather than later, whether 'owned' by MCP or us or whatever gets it 
> done quickest (this is also something for the call). I'd also 
> underline as several people restated in Geneva, that what might come 
> under the MIAPE banner shouldn't include prescriptive methods for 
> doing the work, just for reporting it.
>
> Cheers, Chris.
>
>
> Randy Julian wrote:
>
>> The PSI-MS working group would like to organize a weekly (or 
>> bi-weekly) teleconference to further the development of both the 
>> mzData format as well as push forward on the results interchange 
>> format proposed at Geneva as 'analysisXML'.
>>
>> We are new to this type of interaction, but it works well in other 
>> standards organization and seems like a good way to allow wide 
>> participation and create a transparent process for establishing 
>> standards.
>>
>> The first teleconference was discussed at the Geneva meeting and 
>> despite the late notice, we would like to have a 60 minute call 
>> tomorrow (13 Sept) at 11:00 EST.
>>
>> The first call is organized by Genologics so if you would like to 
>> attend, please e-mail Kent Laursen (ken...@ge...) for 
>> the dialing instructions.
>>
>> We are planning to have these calls every two weeks, so if you miss 
>> this one (due to the late notice...), we are planning another for 
>> Sept 27.
>>
>> For the first call, I would propose the following agenda:
>>
>> 1. Discuss our statement of mission
>> 2. Explicitly declare our deliverables
>> 3. Discuss the use of the documentation of the Global Grid Forum as a 
>> possible template for PSI-MS
>> 4. Discuss the extension mechanism in analysisXML (see attached .tgz 
>> file with the schema)
>>    - what's the right balance between cvParam and sub-schema
>> 5. Setting the next few calls agenda
>>
>> We will take notes at this call and post them to this list.
>>
>> Please contact me (rkj...@in...) with questions, and Kent 
>> (ken...@ge...) for dialing instructions.
>>
>> Thanks,
>> Randy Julian for the PSI-MS group
>
>

-- 
--
 Dr. Pierre-Alain Binz
 Swiss Institute of Bioinformatics
 Proteome Informatics Group
 1, Rue Michel Servet
 CH-1211 Geneve 4
 Switzerland
 - - - - - - - - - - - - - - - - -
 Tel: +41-22-379 50 50
 Fax: +41-22-379 58 58
 Pie...@is...
 http://www.expasy.org/people/Pierre-Alain.Binz.html