Re: [Psidev-ms-dev] First PSI-MS Teleconference

[Chris T. <chr...@eb...>]

Hi all. I'll try to make this call if I can; regardless though I 
wonder if a small addition to the agenda might be desirable, 
namely to mention the 'reponse' (or whatever) to MCP? I'm 
assuming that as owner of the MIAPE: MSI document, Pierre-Alain 
will have a hand in this along with Sean and others with an 
interest? It may be in order to actually draw up a list of 
drafters who can do the point-by-point offline.

To do my bit I will later today post the MIAPE: MS document as a 
final version, but with any sniff of informatics removed (i.e. 
profile to peak list), with a view to putting it into the MSI 
module, to better align that document with the MCP proposal. 
MIAPE: MS has been sitting around for some time now though, and 
so I think it is only fair to the contribtors to that document 
that they see something come from it.

We should have by early next year MIAPE modules for gels and gel 
informatics, and should be moving forwards with general 
separations (everything that is not a 'classical' 1 or 2D gel) 
and study design. I'd like to see something equivalent for mass 
spec informatics sooner rather than later, whether 'owned' by 
MCP or us or whatever gets it done quickest (this is also 
something for the call). I'd also underline as several people 
restated in Geneva, that what might come under the MIAPE banner 
shouldn't include prescriptive methods for doing the work, just 
for reporting it.

Cheers, Chris.


Randy Julian wrote:
> The PSI-MS working group would like to organize a weekly (or bi-weekly) 
> teleconference to further the development of both the mzData format as 
> well as push forward on the results interchange format proposed at 
> Geneva as 'analysisXML'.
> 
> We are new to this type of interaction, but it works well in other 
> standards organization and seems like a good way to allow wide 
> participation and create a transparent process for establishing standards.
> 
> The first teleconference was discussed at the Geneva meeting and despite 
> the late notice, we would like to have a 60 minute call tomorrow (13 
> Sept) at 11:00 EST.
> 
> The first call is organized by Genologics so if you would like to 
> attend, please e-mail Kent Laursen (ken...@ge...) for the 
> dialing instructions.
> 
> We are planning to have these calls every two weeks, so if you miss this 
> one (due to the late notice...), we are planning another for Sept 27.
> 
> For the first call, I would propose the following agenda:
> 
> 1. Discuss our statement of mission
> 2. Explicitly declare our deliverables
> 3. Discuss the use of the documentation of the Global Grid Forum as a 
> possible template for PSI-MS
> 4. Discuss the extension mechanism in analysisXML (see attached .tgz 
> file with the schema)
>    - what's the right balance between cvParam and sub-schema
> 5. Setting the next few calls agenda
> 
> We will take notes at this call and post them to this list.
> 
> Please contact me (rkj...@in...) with questions, and Kent 
> (ken...@ge...) for dialing instructions.
> 
> Thanks,
> Randy Julian for the PSI-MS group

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