[Psidev-ms-dev] CV terms for MS ontology regarding modifications

[Gerhard M. <Ger...@ru...>]

Hello,

I have some further candidates for CV terms in psi-ms.obo:

Proteome Discoverer for instance has two parameters regarding the number 
of modifications:
1) Max. Modifications Per Peptide
2) Max. identical Modifications Per Peptide
which seem to be missing until now in the CV.

In addition under
AnalysisProtocolCollection\SpectrumIdentificationProtocol\ModificationParams\SearchModification\ModParam
there are only CvParams allowed.

Would it make sense to allow here also UserParams?

Best Regards,

-- 
---
Dipl. Inform. med., Dipl. Wirtsch. Inf. Gerhard Mayer
BioInformatik
Medizinisches-Proteom-Center (MPC)
Ruhr-Universität Bochum
Zentrum für klinische Forschung I (ZKF I)
E.042
Universitätsstrasse 150
D-44801 Bochum

Phone:	+49(0)234/32-29262
Fax:	+49(0)234/32-14554
Email:	Ger...@ru...
Web:	http://www.medizinisches-proteom-center.de