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[Psidev-mod-vocab] Version 1.010.0 of the PSI-MOD
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From: John S. G. <joh...@eb...> - 2010-06-04 13:29:03
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Version 1.010.0 of PSI-MOD OBO and XML files are available at http://psidev.cvs.sourceforge.net/psidev/psi/mod/data/ Also available in that repository are the files AtomTabl.XML and AtomTabl.DTD, used to calculate masses and mass differences. This release should be available early next week for browsing at the Ontology Lookup Service http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=MOD These files are a major update to the PSI-MOD-1.009.obo release with edits, corrections, new entries from the RESID Database 61.02 release, and user requests. This version of PSI-MOD has 1771 term entries organized in three ontologies, (1) categorized by amino acid modified, (2) categorized by chemical process, and (3) categorized by isobaric sets. The ontology categorized by chemical process is organized into 33 major chemical categories. Fewer than 365 terms have uncurated definitions. 738 of 768 terms from approved UniMod entries, and 235 of 307 terms from DeltaMass have been categorized. 593 terms are from the RESID Database, and 425 terms have been introduced by ontology annotation and by user request. With this release 135 terms now contain cross-references and synonyms from the NCBI Open Mass Spectrometry Search Algorithm (OMSSA) list of modifications. As always, we appreciate your comments, suggestions on the format, names, improvements in the ontology, and requests for terms accompanied by citations. If you are not subscribed to Psidev-mod-vocab and want to be (or if you are and wish you were not), you should visit https://lists.sourceforge.net/lists/listinfo/psidev-mod-vocab Thanks to Richard Cote and Rui Wang for logistic support. -- John S. Garavelli EMBL Outstation, European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambs CB10 1SD joh...@eb... (044/0)-1223-492529 |
