Re: [Psidev-ms-dev] PSI-MSS WG call reminder

[Matthew C. <mat...@va...>]

At least the wait music is nice.

-Matt


Eric Deutsch wrote:
>
> Hi everyone, the next PSI Mass Spectrometry Standards Working Group 
> call will be Tuesday 8am PDT:
>
>  
>
> http://www.timeanddate.com/worldclock/fixedtime.html?day=5&month=1&year=2010&hour=16&min=0&sec=0&p1=136 
> <http://www.timeanddate.com/worldclock/fixedtime.html?day=5&month=1&year=2010&hour=16&min=0&sec=0&p1=136>
>
>  
>
> 08:00 San Francisco
>
> 11:00 New York
>
> 16:00 London
>
> 17:00 Geneva
>
>  
>
> + Germany: 08001012079
>
> + Switzerland: 0800000860
>
> + UK: 08081095644
>
> + USA: 1-866-314-3683
>
> Generic international: +44 2083222500 (UK number)
>
>  
>
> access code: 297427 #
>
>  
>
> Agenda:
>
> 1) mzML 1.1.0
>
> - Manuscript now in active preparation
>
> - Matt will release updated 1.1.1 of indexedmzML schema: <indexList> 
> name attribute will be enumerated to “spectrum” or “chromatogram”
>
> - Matt will update the example files to reference mzML 1.1.0 but 
> indexedmzML 1.1.1
>
> - Andreas will add “Replaced-by” field to the obsoleted MaRiMba term
>
> - Matt added new terms for ABI TOF/TOF T2D file format
>
> - How do we handle lock mass corrections? Matt will make an example
>
> - Other items?
>
>  
>
> ----
>
> 2) MIAPE-MS revision
>
> - Pierre-Alain has sent out the revised MIAPE-MS draft 2.94 document 
> to the list
>
> - Everyone: Please examine MIAPE-MS 2.94 in Pierre-Alain Binz’s email 
> on 2009-12-22 and respond with comments
>
> - Deadline is Jan 12, after which the document will be submitted to 
> the PSI document process
>
>  
>
> ----
>
> 3) TraML development
>
> - Current version 0.9.2 is available at 
> http://www.psidev.info/index.php?q=node/405
>
> - Version 0.9.3 about to be released
>
> - Use Andreas’s suggestion to use 'isolation window target m/z', 
> MS:1000827
>
> - Eric will update the examples and mapping files for that.
>
> - Eric will add term: “product interpretation rank”
>
> - Matt suggest changing "frag: y ion" to "product: y ion"
>
> - But Andreas points out that the “frag” is supposed to differentiate 
> search parameter from resulting
>
> - Andreas will rephrase all the definitions for “frag: y ion” to be better
>
> - Eric made a change to the 0.9.2 schema to make all elements be a 
> complexType definition
>
> - Eric will release 0.9.3 as soon as these other additions are made
>
> - Eric is having a problem with keys and keyrefs. They’re  not being 
> enforced
>
> - Eric will send the problem to Matt who will look at it
>
> - Fredrik sent out an inclusion list example. Everyone look and comment.
>
> - Fredrik did use the 'isolation window target m/z' term. Update 
> mapping file
>
> - Andreas also sent out an example
>
> - Address Andreas’s suggestions in his email
>
> - Matt asks if we should use lowercase CvParam like mzIdentML? Seems 
> like consensus to change CvParam -> cvParam, UserParam -> userParam
>
> - Eric will send out new version 0.9.3
>
> - Implementations?
>
>   - Matt will implement in ProteoWizard
>
>   - Andreas will implement in OpenMS and update on-line validator
>
>   - ISB implementation in ATAQS nearly done
>
>   - Jim will implement as a test
>
>   - David Cox at Sciex will test implement?
>
> - Are we ready to update validator page?: 
> http://www.psidev.info/index.php?q=node/304
>
>  
>
>  
>