[Psidev-ms-dev] Addition of <targetList> to TraML?

[<ede...@sy...>]

Hi everyone, it has been proposed to add to TraML the capability to encode
ordinary inclusion lists and exclusions lists. Here is what we currently
envision. Comments? Suggestions?



<transitionList>

…

</transitionList>

<targetList>

  <cvParam cvRef="MS" accession="MS:100XXXX" name="includes supersede
excludes"/>

  <targetIncludeList>

    <target id=”PEPTIDEC2+” peptideRef=”PEPTIDEC”>

      <precursor>

        <cvParam cvRef="MS" accession="MS:1000040" name="m/z"
value="862.9467"/>

        <cvParam cvRef="MS" accession="MS:1000211" name="charge number"
value="2"/>

      </precursor>

      <configurationList>…</configurationList>

    </target>

    …

  </targetIncludeList>

  <targetExcludeList>

    <target id=”PEPTIDEM3+” peptideRef=”PEPTIDEM”>

        <cvParam cvRef="MS" accession="MS:1000040" name="m/z"
value="698.3443"/>

        <cvParam cvRef="MS" accession="MS:1000211" name="charge number"
value="3"/>

      <configurationList>…</configurationList>

    </target>

    …

  </targetExcludeList>

</targetList>